DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2005256
GeneCtcf
Synonyms
DescriptionCCCTC-binding factor
LocusNM_181322 UCSC: chr8:108160438-108206822(+) OLP: chr8:108160438-108206822(+)
DB links


Entrez 13018
MGI 109447
Ensembl ENSMUSG00000005698
Vega OTTMUSG00000017298
Featureprotein-coding
GO_BP
  •   18 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      DNA methylation (GO:0006306)
      regulation of gene expression by genetic imprinting (GO:0006349)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      chromosome segregation (GO:0007059)
      dosage compensation by inactivation of X chromosome (GO:0009048)
      maintenance of DNA methylation (GO:0010216)
      positive regulation of gene expression (GO:0010628)
      negative regulation of gene expression (GO:0010629)
      chromatin modification (GO:0016568)
      nucleosome positioning (GO:0016584)
      regulation of histone methylation (GO:0031060)
      regulation of histone acetylation (GO:0035065)
      regulation of gene expression, epigenetic (GO:0040029)
      regulation of molecular function, epigenetic (GO:0040030)
      negative regulation of transcription, DNA-templated (GO:0045892)
      positive regulation of transcription, DNA-templated (GO:0045893)
GO_MF
  •   11 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription (GO:0001078)
      nucleic acid binding (GO:0003676)
      DNA binding (GO:0003677)
      chromatin binding (GO:0003682)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      protein binding (GO:0005515)
      chromatin insulator sequence binding (GO:0043035)
      sequence-specific DNA binding (GO:0043565)
      transcription regulatory region DNA binding (GO:0044212)
      metal ion binding (GO:0046872)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005256
(v2.0)		CtcfNM_18132213018
12.920522.296336.304846.531432.524227.134210.351337.118633.168623.7252
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005256
(v2.0)		Ctcf13018
726/3670.4703495/3670.3147214/3672.7827561/3671.936210/367-3.0187123/367-2.1627
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005256
(v2.0)		Ctcf13018
416/1391.0633240/1390.6679208/1394.0687522/1393.21712/139-3.518867/139-1.6303
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2005256
(v2.0)		Ctcf13018
34.576812228.34
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2005256
(v2.0)		Ctcf13018
7.6375938.21
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005320
(v1.0)		6630H3029E07-3Mm.493Ctcf13018
Ctcf3.48033.38693.78263.55883.53463.61153.4741
0005320
(v1.0)		6996H3040A12-3Mm.493Ctcf13018
Ctcf3.85493.98023.54943.73133.46983.79543.6845
MOE430 N/A
Agilent44K N/A
Proteome N/A