DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2007889

Gene

Gdf9

Synonyms

Gdf-9

Description

growth differentiation factor 9

Locus

NM_008110 UCSC: chr11:53246788-53251404(+) OLP: chr11:53246788-53251404(+)

DB links

Entrez 14566
MGI 95692
Ensembl ENSMUSG00000018238
Vega OTTMUSG00000000055

Feature

protein-coding

GO_BP

4 Terms

GO_MF

2 Terms

GO_CC

3 Terms

KEGG

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2007889 (v2.0)	Gdf9	NM_008110	14566	4.7334	2233.75	299.041	79.6064	39.5176	0.208316	0.34476	310.695	94.8486	0.163114

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2007889 (v2.0)	Gdf9	14566	648/505	-0.1528	449/505	-0.2851	495/505	3.5409	1166/505	2.5326	71/505	-0.7643	597/505	-0.3571

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2007889 (v2.0)	Gdf9	14566	241/184	-0.1228	179/184	-0.1551	130/184	3.0188	388/184	2.3918	43/184	-0.0386	202/184	-0.4617

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2007889 (v2.0)	Gdf9	14566	86.4111	177	48.82

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2007889 (v2.0)	Gdf9	14566	27.5665	41	67.24

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0007958 (v1.0)	7931	H3056F01-3	Mm.9714	Gdf9	14566	U012594	NAP012200-001	Gdf9;	TC825185,TC825183	Q07105	U,F,2	4.3603	4.9849	4.1831	3.9768	3.5285	3.3571	3.0456
0007958 (v1.0)	14402	J0460C07-3	Mm.9714	Gdf9	14566	U012594	NAP012200-001	Gdf9;	TC825185,TC825183	Q07105	U,F,2	4.2218	4.8615	4.2405	3.9249	3.4724	3.2618	2.9498

N/A

N/A

N/A