DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018472
GeneRnf34
Synonymsphafin 1
Descriptionring finger protein 34
LocusNM_030564 UCSC: chr5:123300197-123318954(+) OLP: chr5:123300197-123318954(+)
DB links


Entrez 80751
MGI 2153340
Ensembl ENSMUSG00000029474
Featureprotein-coding
GO_BP
  •   5 Terms
      apoptotic process (GO:0006915)
      protein ubiquitination (GO:0016567)
      proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)
      negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (GO:1902042)
      negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis (GO:2001271)
GO_MF
  •   15 Terms
      ubiquitin-protein transferase activity (GO:0004842)
      zinc ion binding (GO:0008270)
      UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
      ligase activity (GO:0016874)
      ribosomal S6-glutamic acid ligase activity (GO:0018169)
      coenzyme F420-0 gamma-glutamyl ligase activity (GO:0043773)
      coenzyme F420-2 alpha-glutamyl ligase activity (GO:0043774)
      metal ion binding (GO:0046872)
      protein-glycine ligase activity (GO:0070735)
      protein-glycine ligase activity, initiating (GO:0070736)
      protein-glycine ligase activity, elongating (GO:0070737)
      tubulin-glycine ligase activity (GO:0070738)
      protein-glutamic acid ligase activity (GO:0070739)
      tubulin-glutamic acid ligase activity (GO:0070740)
      phosphatidylinositol phosphate binding (GO:1901981)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018472
(v2.0)		Rnf34NM_03056480751
15.3758143.076261.32628.703722.660230.908113.0116189.12729.735230.1867
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018472
(v2.0)		Rnf3480751
661/3780.2927389/378-0.0746169/3782.4026417/3781.466833/378-1.4328227/378-1.3293
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018472
(v2.0)		Rnf3480751
327/1700.4288174/170-0.0822161/1703.4321403/1702.55896/170-2.579277/170-1.7223
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018472
(v2.0)		Rnf3480751
76.349915349.9
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018472
(v2.0)		Rnf3480751
15.518518.25
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017944
(v1.0)		12477H3144C08-3Mm.7780Rnf3480751
U006152NAP110215-1Rnf34;TC886178Q99KR6U,F,24.11084.17723.46683.58552.80882.94462.6848
MOE430 N/A
Agilent44K N/A
Proteome N/A