DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2018557

Gene

Rpl27

Synonyms

Description

ribosomal protein L27

Locus

NM_011289 UCSC: chr11:101303559-101306910(+) OLP: chr11:101303559-101306910(+)

DB links

Entrez 19942
MGI 98036
Ensembl ENSMUSG00000063316
Vega OTTMUSG00000002868

Feature

protein-coding

GO_BP

GO_MF

1 Terms

GO_CC

4 Terms

KEGG

1 Terms

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2018557 (v2.0)	Rpl27	NM_011289	19942	758.807	57.9047	6.47512	223.639	938.35	2188.2	490.661	6.33301	961.302	2627.77

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2018557 (v2.0)	Rpl27	19942	422/273	0.1151	250/273	-0.2422	96/273	2.0455	252/273	1.2083	16/273	-1.9693	129/273	-1.6693

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2018557 (v2.0)	Rpl27	19942	243/153	0.1537	130/153	-0.3486	93/153	2.7882	241/153	1.9692	7/153	-2.2383	81/153	-1.4996

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2018557 (v2.0)	Rpl27	19942	51.4504	99	51.97

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2018557 (v2.0)	Rpl27	19942	23.5221	68	34.59

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0018029 (v1.0)	7109	H3042C11-3	Mm.28985	Rpl27	19942	U043226	NAP056265-1	Rpl27;	TC879909,TC879907	Q9CSM4	U,F,2	2.1582	2.4369	2.8335	2.8507	2.4957	2.6363	2.5074
0018029 (v1.0)	21739	L0907E08-3		Rpl27	19942	U043226	NAP033910-1	Rpl27;	TC873033	Q9CSM4	U,F,2	3.3728	3.3375	3.3964	3.2685	3.4038	3.3581	3.3331

N/A

N/A

N/A