DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2019898
GeneSmg6
Synonyms
DescriptionSmg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
LocusNM_001002764 UCSC: chr11:74739374-74977950(+) OLP: chr11:74739374-74977950(+)
DB links


Entrez 103677
MGI 2144117
Ensembl ENSMUSG00000038290
Vega OTTMUSG00000006198
Featureprotein-coding
GO_BP
  •   3 Terms
      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
      telomere maintenance (GO:0000723)
      RNA phosphodiester bond hydrolysis, endonucleolytic (GO:0090502)
GO_MF
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019898
(v2.0)		Smg6NM_001002764103677
8.625817.567914.107523.184318.58857.550458.4879718.528820.6096.42954
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019898
(v2.0)		Smg6103677
730/3740.451522/3740.364391/3743.62281311/3743.132313/374-2.6977116/374-2.2734
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019898
(v2.0)		Smg6103677
371/1500.7896254/1500.6402276/1504.3738813/1503.74738/150-2.040665/150-1.7821
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019898
(v2.0)		Smg6103677
65.845315741.94
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019898
(v2.0)		Smg6103677
6.9739957.34
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A