DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2021940
GeneTrim13
SynonymsLEU5
Rfp2
RNF77
Descriptiontripartite motif-containing 13
LocusNM_001164220 UCSC: chr14:62217063-62224782(+) OLP: chr14:62217063-62224782(+)
NM_023233 UCSC: chr14:62218349-62224782(+) OLP: chr14:62218349-62224782(+)
DB links


Entrez 66597
MGI 1913847
Ensembl ENSMUSG00000035235
Featureprotein-coding
GO_BP
  •   11 Terms
      signal transduction (GO:0007165)
      positive regulation of cell death (GO:0010942)
      positive regulation of macroautophagy (GO:0016239)
      ER-associated ubiquitin-dependent protein catabolic process (GO:0030433)
      negative regulation of viral transcription (GO:0032897)
      positive regulation of I-kappaB kinase/NF-kappaB signaling (GO:0043123)
      proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)
      innate immune response (GO:0045087)
      positive regulation of NF-kappaB transcription factor activity (GO:0051092)
      protein autoubiquitination (GO:0051865)
      negative regulation of viral release from host cell (GO:1902187)
GO_MF
  •   15 Terms
      ubiquitin-protein transferase activity (GO:0004842)
      signal transducer activity (GO:0004871)
      zinc ion binding (GO:0008270)
      UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
      ligase activity (GO:0016874)
      ribosomal S6-glutamic acid ligase activity (GO:0018169)
      coenzyme F420-0 gamma-glutamyl ligase activity (GO:0043773)
      coenzyme F420-2 alpha-glutamyl ligase activity (GO:0043774)
      metal ion binding (GO:0046872)
      protein-glycine ligase activity (GO:0070735)
      protein-glycine ligase activity, initiating (GO:0070736)
      protein-glycine ligase activity, elongating (GO:0070737)
      tubulin-glycine ligase activity (GO:0070738)
      protein-glutamic acid ligase activity (GO:0070739)
      tubulin-glutamic acid ligase activity (GO:0070740)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021940
(v2.0)		Trim13NM_001164220,NM_02323366597
3.55933240.683230.94636.657442.964663.38878.07194186.08444.339263.4842
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2021940
(v2.0)		Trim1366597
560/3370.2193390/3370.094369/3371.2827186/3370.470875/337-0.1086359/337-0.5063
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2021940
(v2.0)		Trim1366597
286/1580.3414187/1580.126160/1582.1213150/1581.243127/158-0.4762198/158-0.2719
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2021940
(v2.0)		Trim1366597
56.844710554.14
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2021940
(v2.0)		Trim1366597
14.9746024.96
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021313
(v1.0)		13399J0033B02-3Mm.23959Trim1366597
U015729NAP095526-001Trim13;TC815806Q9CYB0U,F,23.74093.77673.40883.58823.25493.33173.3582
MOE430 N/A
Agilent44K N/A
Proteome N/A