DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2000030
Gene1110008L16Rik
Synonyms
DescriptionRIKEN cDNA 1110008L16 gene
LocusNM_025373 UCSC: chr12:56403624-56483478(+) OLP: chr12:56403624-56483478(+)
DB links


Entrez 66132
MGI 1913382
Ensembl ENSMUSG00000021023
Vega OTTMUSG00000044896
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.656
SPR
0.966
Oo
0.859
1C
1.05
2C
0.938
4C
0.916
ESC
0.725
MEF
0.91
p1C
0.925
p4C
0.919
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2000030
(v2.0)		1110008L16RikNM_02537366132
3.524928.241966.2240310.22087.670867.244354.308627.121787.410137.29869
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.044
H3.3
Rep.1
-0.018
H3.3
Rep.2
1.669
H3K4me3
Rep.1
1.044
H3K4me3
Rep.2
-2.207
H3K27me3
Rep.1
-2.306
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2000030
(v2.0)		1110008L16Rik66132
606/438-0.0443469/438-0.0175117/4381.6695360/4381.044122/438-2.2071133/438-2.3058
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
-0.171
H3.3
Rep.1
-0.293
H3.3
Rep.2
2.626
H3K4me3
Rep.1
1.994
H3K4me3
Rep.2
-4.073
H3K27me3
Rep.1
-2.113
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2000030
(v2.0)		1110008L16Rik66132
261/206-0.1705182/206-0.2933110/2062.6264329/2061.99362/206-4.072671/206-2.1126
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2000030
(v2.0)		1110008L16Rik66132
84.148717248.92
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2000030
(v2.0)		1110008L16Rik66132
21.227110620.03
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0000038
(v1.0)		8006H3058B05-3Mm.254891110008L16Rik66132
U013963NAP095810-0011110008L16Rik;TC905270,TC905269Q9CTH1U,F2.86623.05593.30563.3922.96223.06282.9211
MOE430 N/A
Agilent44K N/A
Proteome N/A