DBTMEE
Database of Transcriptome in Mouse Early Embryos


Statistics of DBTMEE

  • Species: Mus_musculus
  • Reference: mm9, UCSC Genome Browser, Oct. 2012, Build 37.1
  • Last modified: 2021/03/04
  • Number of tables: 20
  • Number of records: 492480

  • Table nameNumber of recordsDescription
    Agilent44K 15518 Microarray profile [PMID:21344949]
    Illumina_Oo_2C_FPKM_gene_guided 14837 RNA-seq: Profile in Oocyte and 2-cell stage (RefSeq annotation-guided gene level) [PMID:22722858]
    MOE430 14428 Microarray profile [PMID:15282163]
    NIA60mer 20138 Microarray profile [PMID:14723852]
    Proteome 3251 Proteome by semiquantitative MS analysis [PMID:20876089]
    SOLiD_Cluster_gene_guided 34344[HTML]   Expression patterns in RNA-seq profile
    SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided 18226 RNA-seq: mRNA profile in Oocyte, Sperm, and 1-cell stage (RefSeq annotation-guided gene level) [PMID:22242016]
    SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided 17169 RNA-seq: mRNA profile in Oocyte, Sperm, and parthenogenetic 1-cell stage (RefSeq annotation-guided gene level) [PMID:22242016]
    SOLiD_OocyteTo4C_FPKM_gene_guided 18232 RNA-seq: mRNA profile in Oocyte, 1-cell, 2-cell, 4-cell and MEF (RefSeq annotation-guided gene level expression)
    SOLiD_Partheno1C_FPKM_gene_guided 17343 RNA-seq: mRNA profile in Oocyte, 1-cell, parthenogenetic 1-cell stages (RefSeq annotation-guided gene level)
    SOLiD_Partheno4C_FPKM_gene_guided 17314 RNA-seq: mRNA profile in Oocyte, 1-cell, parthenogenetic 1-cell stages (RefSeq annotation-guided gene level)
    SOLiD_SC_Oo_REPLICA_FPKM_gene_guided 12385 Single Cell RNA-seq: FPKMs in oocyte replicates (RefSeq annotation-guided gene level) [PMID:19349980]
    SPR_Histone_Erkek_2KaroundTSS 18965 Histone Enrichments +/-2Kbp from TSS in sperm [PMID:23770822]
    SPR_Histone_Erkek_5KaroundTSS 18476 Histone Enrichments +/-5Kbp from TSS in sperm [PMID:23770822]
    SPR_Methy_Kobayashi_2KaroundTSS 19449 Methylation levels +/-2Kbp from TSS in sperm [PMID:22242016]
    SPR_Methy_Kobayashi_5KaroundTSS 18726 Methylation levels +/-5Kbp from TSS in sperm [PMID:22242016]
    TMEE_GENE 152433[HTML]   Gene information compiled from RefSeq, MGI and NCBI
    Ver2_FPKM 20724 RNA-seq: updated RNA profile (Version 2.0, RefSeq annotation-guided coding and non-coding gene levels).
    This contains ES-cells and iPS-cells ([PMID:24527385])
    Ver2_REPLICA_FPKM 20471 RNA-seq: updated FPKMs in replicates (Version 2.0, RefSeq annotation-guided coding and non-coding gene levels)
    Ver2_REPLICA_MappedRead 20051 RNA-seq: updated Mapped reads in replicates (Version 2.0, RefSeq annotation-guided coding and non-coding gene levels)