DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2001720

Gene

AU040320

Synonyms

Description

expressed sequence AU040320

Locus

NM_001035525 UCSC: chr4:126430799-126546938(+) OLP: chr4:126430799-126546938(+)
NM_133886 UCSC: chr4:126431014-126531580(+) OLP: chr4:126431014-126531580(+)
NM_001035526 UCSC: chr4:126431014-126546938(+) OLP: chr4:126431014-126546938(+)

DB links

Entrez 100317
MGI 2140475
Ensembl ENSMUSG00000028830
Vega OTTMUSG00000009282

Feature

protein-coding

GO_BP

GO_MF

GO_CC

4 Terms

KEGG

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2001720 (v2.0)	AU040320	NM_001035525,NM_001035526,NM_133886	100317	15.8832	31.5579	47.9999	11.9914	5.40571	2.10496	5.05466	51.0507	6.71141	1.59613

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2001720 (v2.0)	AU040320	100317	823/493	0.2261	397/493	-0.4276	168/493	2.0214	355/493	0.8542	26/493	-2.1449	158/493	-2.2302

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2001720 (v2.0)	AU040320	100317	396/187	0.5671	165/187	-0.295	156/187	3.2581	329/187	2.1314	9/187	-2.1989	96/187	-1.5464

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2001720 (v2.0)	AU040320	100317	97.6571	220	44.39

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2001720 (v2.0)	AU040320	100317	23.3654	143	16.34

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0001841 (v1.0)	10421	H3095G10-3	Mm.206206	AU040320	100317	U004833	NAP000280-001	AU040320;Ncdn;	TC836776		U,F,2	4.4316	4.259	3.7094	3.9572	3.938	3.8505	3.9366

N/A

N/A

N/A