DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2002195
GeneAifm1
SynonymsAIF
AIFsh2
apoptosis-inducing factor
Pdcd8
Descriptionapoptosis-inducing factor, mitochondrion-associated 1
LocusNM_012019 UCSC: chrX:45828121-45866740(-) OLP: chrX:45828121-45866740(-)
NM_001290364 UCSC: chrX:45828121-45866740(-) OLP: chrX:45828121-45866740(-)
DB links


Entrez 26926
MGI 1349419
Ensembl ENSMUSG00000036932
Vega OTTMUSG00000017542
Featureprotein-coding
GO_BP
  •   13 Terms
      apoptotic process (GO:0006915)
      activation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0006919)
      response to oxidative stress (GO:0006979)
      apoptotic mitochondrial changes (GO:0008637)
      positive regulation of cell death (GO:0010942)
      neuron differentiation (GO:0030182)
      mitochondrial respiratory chain complex I assembly (GO:0032981)
      positive regulation of apoptotic process (GO:0043065)
      cell redox homeostasis (GO:0045454)
      neuron apoptotic process (GO:0051402)
      oxidation-reduction process (GO:0055114)
      intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (GO:0070059)
      regulation of apoptotic DNA fragmentation (GO:1902510)
GO_MF
  •   35 Terms
      C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity (GO:0000252)
      DNA binding (GO:0003677)
      aldo-keto reductase (NADP) activity (GO:0004033)
      electron-transferring-flavoprotein dehydrogenase activity (GO:0004174)
      isocitrate dehydrogenase activity (GO:0004448)
      mevaldate reductase activity (GO:0004495)
      protein binding (GO:0005515)
      gluconate dehydrogenase activity (GO:0008875)
      NAD(P)H oxidase activity (GO:0016174)
      steroid dehydrogenase activity (GO:0016229)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on NAD(P)H (GO:0016651)
      epoxide dehydrogenase activity (GO:0018451)
      5-exo-hydroxycamphor dehydrogenase activity (GO:0018452)
      2-hydroxytetrahydrofuran dehydrogenase activity (GO:0018453)
      acetoin dehydrogenase activity (GO:0019152)
      phenylcoumaran benzylic ether reductase activity (GO:0032442)
      D-xylose:NADP reductase activity (GO:0032866)
      L-arabinose:NADP reductase activity (GO:0032867)
      D-arabinitol dehydrogenase, D-ribulose forming (NADP+) activity (GO:0033709)
      steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0033764)
      steroid dehydrogenase activity, acting on the CH-CH group of donors (GO:0033765)
      (R)-(-)-1,2,3,4-tetrahydronaphthol dehydrogenase activity (GO:0034831)
      3-hydroxymenthone dehydrogenase activity (GO:0034840)
      very long-chain-3-hydroxyacyl-CoA dehydrogenase activity (GO:0035380)
      dihydrotestosterone 17-beta-dehydrogenase activity (GO:0035410)
      (R)-2-hydroxyisocaproate dehydrogenase activity (GO:0043713)
      L-arabinose 1-dehydrogenase (NADP+) activity (GO:0044103)
      L-xylulose reductase (NAD+) activity (GO:0044105)
      protein dimerization activity (GO:0046983)
      3-ketoglucose-reductase activity (GO:0048258)
      flavin adenine dinucleotide binding (GO:0050660)
      (R)-2-hydroxyglutarate dehydrogenase activity (GO:0051990)
      D-arabinitol dehydrogenase, D-xylulose forming (NADP+) activity (GO:0052677)
      FAD binding (GO:0071949)
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.036
SPR
1.07
Oo
0.908
1C
1.284
2C
1.381
4C
1.165
ESC
1.413
MEF
0.782
p1C
1.383
p4C
1.173
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002195
(v2.0)		Aifm1NM_001290364,NM_01201926926
9.8541710.75247.0822418.252623.057113.622224.87495.0529723.150713.8921
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.416
H3.3
Rep.1
0.433
H3.3
Rep.2
2.031
H3K4me3
Rep.1
2.008
H3K4me3
Rep.2
-0.648
H3K27me3
Rep.1
-0.445
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2002195
(v2.0)		Aifm126926
328/1720.4164252/1720.432661/1722.0306278/1722.008226/172-0.6481191/172-0.4452
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.82
H3.3
Rep.1
0.709
H3.3
Rep.2
3.096
H3K4me3
Rep.1
2.874
H3K4me3
Rep.2
-1.627
H3K27me3
Rep.1
-1.468
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2002195
(v2.0)		Aifm126926
185/730.8202130/730.708759/733.0963219/732.87395/73-1.627139/73-1.4684
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2002195
(v2.0)		Aifm126926
31.56626449.32
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2002195
(v2.0)		Aifm126926
14.10324233.58
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A