DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2003273
GeneBax
SynonymsNkx3-1
bagpipe
Nkx-3.1
NKX3.1
NKX3A
DescriptionNK-3 transcription factor, locus 1 (Drosophila)
LocusNM_007527 UCSC: chr7:52717065-52722268(-) OLP: chr7:52717065-52722268(-)
DB links


Entrez 12028
MGI 99702
Ensembl ENSMUSG00000003873
Featureprotein-coding
GO_BP
  •   108 Terms
      ovarian follicle development (GO:0001541)
      neuron migration (GO:0001764)
      leukocyte homeostasis (GO:0001776)
      T cell homeostatic proliferation (GO:0001777)
      B cell homeostasis (GO:0001782)
      B cell apoptotic process (GO:0001783)
      kidney development (GO:0001822)
      release of cytochrome c from mitochondria (GO:0001836)
      protein insertion into mitochondrial membrane involved in apoptotic signaling pathway (GO:0001844)
      blood vessel remodeling (GO:0001974)
      myeloid cell homeostasis (GO:0002262)
      B cell negative selection (GO:0002352)
      B cell homeostatic proliferation (GO:0002358)
      positive regulation of B cell apoptotic process (GO:0002904)
      glycosphingolipid metabolic process (GO:0006687)
      regulation of nitrogen utilization (GO:0006808)
      apoptotic process (GO:0006915)
      activation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0006919)
      transformed cell apoptotic process (GO:0006927)
      cellular response to DNA damage stimulus (GO:0006974)
      inner mitochondrial membrane organization (GO:0007007)
      outer mitochondrial membrane organization (GO:0007008)
      germ cell development (GO:0007281)
      spermatogenesis (GO:0007283)
      nervous system development (GO:0007399)
      sex differentiation (GO:0007548)
      mitochondrial fusion (GO:0008053)
      cell proliferation (GO:0008283)
      negative regulation of cell proliferation (GO:0008285)
      male gonad development (GO:0008584)
      extrinsic apoptotic signaling pathway via death domain receptors (GO:0008625)
      intrinsic apoptotic signaling pathway in response to DNA damage (GO:0008630)
      activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c (GO:0008635)
      apoptotic mitochondrial changes (GO:0008637)
      fertilization (GO:0009566)
      response to wounding (GO:0009611)
      response to toxic substance (GO:0009636)
      response to salt stress (GO:0009651)
      post-embryonic development (GO:0009791)
      response to ionizing radiation (GO:0010212)
      establishment or maintenance of transmembrane electrochemical gradient (GO:0010248)
      response to gamma radiation (GO:0010332)
      positive regulation of calcium ion transport into cytosol (GO:0010524)
      hypothalamus development (GO:0021854)
      cerebral cortex development (GO:0021987)
      negative regulation of protein binding (GO:0032091)
      positive regulation of protein oligomerization (GO:0032461)
      negative regulation of endoplasmic reticulum calcium ion concentration (GO:0032471)
      release of matrix enzymes from mitochondria (GO:0032976)
      negative regulation of peptidyl-serine phosphorylation (GO:0033137)
      regulation of mammary gland epithelial cell proliferation (GO:0033599)
      cellular response to UV (GO:0034644)
      limb morphogenesis (GO:0035108)
      ectopic germ cell programmed cell death (GO:0035234)
      odontogenesis of dentin-containing tooth (GO:0042475)
      regulation of apoptotic process (GO:0042981)
      positive regulation of apoptotic process (GO:0043065)
      regulation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0043281)
      regulation of protein homodimerization activity (GO:0043496)
      regulation of protein heterodimerization activity (GO:0043497)
      regulation of neuron apoptotic process (GO:0043523)
      negative regulation of neuron apoptotic process (GO:0043524)
      positive regulation of neuron apoptotic process (GO:0043525)
      mitochondrial fragmentation involved in apoptotic process (GO:0043653)
      development of secondary sexual characteristics (GO:0045136)
      cellular respiration (GO:0045333)
      retinal cell programmed cell death (GO:0046666)
      positive regulation of developmental pigmentation (GO:0048087)
      negative regulation of fibroblast proliferation (GO:0048147)
      spermatid differentiation (GO:0048515)
      post-embryonic camera-type eye morphogenesis (GO:0048597)
      response to axon injury (GO:0048678)
      homeostasis of number of cells (GO:0048872)
      homeostasis of number of cells within a tissue (GO:0048873)
      protein oligomerization (GO:0051259)
      protein homooligomerization (GO:0051260)
      positive regulation of release of sequestered calcium ion into cytosol (GO:0051281)
      neuron apoptotic process (GO:0051402)
      regulation of cell cycle (GO:0051726)
      regulation of mitochondrial membrane potential (GO:0051881)
      transmembrane transport (GO:0055085)
      Sertoli cell proliferation (GO:0060011)
      retina development in camera-type eye (GO:0060041)
      positive regulation of apoptotic process involved in mammary gland involution (GO:0060058)
      vagina development (GO:0060068)
      intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (GO:0070059)
      thymocyte apoptotic process (GO:0070242)
      mitochondrion morphogenesis (GO:0070584)
      cellular response to organic substance (GO:0071310)
      intrinsic apoptotic signaling pathway by p53 class mediator (GO:0072332)
      positive regulation of release of cytochrome c from mitochondria (GO:0090200)
      apoptotic signaling pathway (GO:0097190)
      extrinsic apoptotic signaling pathway (GO:0097191)
      extrinsic apoptotic signaling pathway in absence of ligand (GO:0097192)
      intrinsic apoptotic signaling pathway (GO:0097193)
      activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway (GO:0097296)
      positive regulation of endoplasmic reticulum unfolded protein response (GO:1900103)
      regulation of mitochondrial membrane permeability involved in apoptotic process (GO:1902108)
      positive regulation of mitochondrial membrane permeability involved in apoptotic process (GO:1902110)
      apoptotic process involved in patterning of blood vessels (GO:1902262)
      apoptotic process involved in embryonic digit morphogenesis (GO:1902263)
      regulation of mitochondrial membrane permeability involved in programmed necrotic cell death (GO:1902445)
      positive regulation of apoptotic DNA fragmentation (GO:1902512)
      retinal cell apoptotic process (GO:1990009)
      B cell receptor apoptotic signaling pathway (GO:1990117)
      negative regulation of apoptotic signaling pathway (GO:2001234)
      positive regulation of extrinsic apoptotic signaling pathway in absence of ligand (GO:2001241)
      positive regulation of intrinsic apoptotic signaling pathway (GO:2001244)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003273
(v2.0)		BaxNM_00752712028
86.95488.6524213.582516.754128.8962126.56419.0515.857543.8918164.422
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2003273
(v2.0)		Bax12028
670/4280.1334363/428-0.352958/4280.7019130/428-0.385229/428-1.7908242/428-1.4163
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2003273
(v2.0)		Bax12028
342/1970.2817180/197-0.24548/1971.5075109/1970.472314/197-1.6875104/197-1.5074
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2003273
(v2.0)		Bax12028
77.708813358.43
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2003273
(v2.0)		Bax12028
29.11977538.83
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003394
(v1.0)		5356NM_007527.1Mm.19904Bax12028
U028529NAP099338-001Bax;TC809898,TC809896Q078132.613.02822.89442.75092.45932.71072.5946
MOE430 N/A
Agilent44K N/A
Proteome N/A