DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2004092

Gene

Ccnc

Synonyms

Description

cyclin C

Locus

NM_001122982 UCSC: chr4:21654848-21675109(+) OLP: chr4:21654848-21675109(+)
NM_001290422 UCSC: chr4:21654848-21677694(+) OLP: chr4:21654848-21677694(+)
NM_016746 UCSC: chr4:21654848-21677694(+) OLP: chr4:21654848-21677694(+)
NM_001290420 UCSC: chr4:21654848-21687069(+) OLP: chr4:21654848-21687069(+)

DB links

Entrez 51813
MGI 1858199
Ensembl ENSMUSG00000028252
Vega OTTMUSG00000004717

Feature

protein-coding

GO_BP

4 Terms

GO_MF

1 Terms

GO_CC

3 Terms

KEGG

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2004092 (v2.0)	Ccnc	NM_001122982,NM_001290420,NM_001290422,NM_016746	51813	5.74918	17.7703	9.42949	26.8969	28.1967	10.1177	8.1784	8.74783	30.2821	9.22366

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2004092 (v2.0)	Ccnc	51813	548/321	0.258	414/321	0.2501	162/321	2.5698	359/321	1.4854	67/321	-0.1998	544/321	0.1612

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2004092 (v2.0)	Ccnc	51813	303/155	0.4517	232/155	0.4631	160/155	3.5471	340/155	2.4456	15/155	-1.2566	84/155	-1.4666

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2004092 (v2.0)	Ccnc	51813	31.3979	90	34.89

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2004092 (v2.0)	Ccnc	51813	11.8856	61	19.48

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0004206 (v1.0)	561	C0117F09-3	Mm.4300	Ccnc	51813	U004119	NAP093200-001	Ccnc;	TC815517	Q62447	U,F,2	2.6625	2.7146	2.707	3.0916	2.9425	2.9404	3.0716
0004206 (v1.0)	9418	H3080H04-3	Mm.4300	Ccnc	51813	U004119	NAP001115-001	Ccnc;	TC815516	Q62447	U,F,2	3.1065	3.016	3.001	3.0141	3.0408	3.0238	3.0746

N/A

N/A

N/A