DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2005087
GeneCpsf6
SynonymsCFIM68
HPBRII-4
HPBRII-7
Descriptioncleavage and polyadenylation specific factor 6
LocusNM_001013391 UCSC: chr10:116781724-116814029(-) OLP: chr10:116781724-116814029(-)
DB links


Entrez 432508
MGI 1913948
Ensembl ENSMUSG00000055531
Vega OTTMUSG00000042016
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
Log10 (FPKM+1)
0.898
SPR
0.836
Oo
0.884
1C
1.51
2C
1.44
4C
1.369
ESC
1.272
MEF
1.058
p1C
1.495
p4C
1.287
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005087
(v2.0)		Cpsf6NM_001013391432508
6.899815.860156.6641131.385426.526722.389817.723110.43530.27818.3428
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.595
H3.3
Rep.1
0.422
H3.3
Rep.2
3.584
H3K4me3
Rep.1
2.663
H3K4me3
Rep.2
-1.033
H3K27me3
Rep.1
-0.694
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005087
(v2.0)		Cpsf6432508
561/2600.5948378/2600.4223268/2603.5844660/2602.663530/260-1.0333243/260-0.6935
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.732
H3.3
Rep.1
0.302
H3.3
Rep.2
4.269
H3K4me3
Rep.1
3.356
H3K4me3
Rep.2
-2.078
H3K27me3
Rep.1
-1.391
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005087
(v2.0)		Cpsf6432508
366/1540.7324206/1540.3017263/1544.2693636/1543.35638/154-2.077688/154-1.3914
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2005087
(v2.0)		Cpsf6432508
33.432920116.63
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2005087
(v2.0)		Cpsf6432508
5.34131663.22
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A