DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2005286
GeneCtr9
SynonymsSh2bp1
Tsbp
Tsp
DescriptionCtr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
LocusNM_009431 UCSC: chr7:118172465-118199891(+) OLP: chr7:118172465-118199891(+)
DB links


Entrez 22083
MGI 109345
Ensembl ENSMUSG00000005609
Vega OTTMUSG00000023898
Featureprotein-coding
GO_BP
  •   17 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      endodermal cell fate commitment (GO:0001711)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      JAK-STAT cascade (GO:0007259)
      histone monoubiquitination (GO:0010390)
      Wnt signaling pathway (GO:0016055)
      stem cell maintenance (GO:0019827)
      positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
      histone H2B ubiquitination (GO:0033523)
      negative regulation of myeloid cell differentiation (GO:0045638)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of histone H3-K4 methylation (GO:0051571)
      interleukin-6-mediated signaling pathway (GO:0070102)
      cellular response to lipopolysaccharide (GO:0071222)
      histone H3-K4 trimethylation (GO:0080182)
      positive regulation of histone H3-K79 methylation (GO:2001162)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005286
(v2.0)		Ctr9NM_00943122083
8.9821516.548732.519441.653439.444614.246823.834627.325142.613415.4663
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005286
(v2.0)		Ctr922083
634/4180.088455/4180.0061417/4183.55981002/4182.585481/418-0.3063585/418-0.1141
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005286
(v2.0)		Ctr922083
280/1700.2059190/1700.044406/1704.7611950/1703.79416/170-1.29992/170-1.4701
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2005286
(v2.0)		Ctr922083
51.535513538.17
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2005286
(v2.0)		Ctr922083
23.82679724.56
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A