DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2005767
GeneDdx3x
SynonymsD1Pas1-rs2
Ddx3
embryonic RNA helicase
Fin14
DescriptionDEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
LocusNM_010028 UCSC: chrX:12858148-12871109(+) OLP: chrX:12858148-12871109(+)
DB links


Entrez 13205
MGI 103064
Ensembl ENSMUSG00000000787
Vega OTTMUSG00000017078
Featureprotein-coding
GO_BP
  •   32 Terms
      immune system process (GO:0002376)
      ATP catabolic process (GO:0006200)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      regulation of translation (GO:0006417)
      apoptotic process (GO:0006915)
      chromosome segregation (GO:0007059)
      extrinsic apoptotic signaling pathway via death domain receptors (GO:0008625)
      response to virus (GO:0009615)
      RNA secondary structure unwinding (GO:0010501)
      negative regulation of translation (GO:0017148)
      positive regulation of cell growth (GO:0030307)
      negative regulation of cell growth (GO:0030308)
      negative regulation of protein complex assembly (GO:0031333)
      DNA duplex unwinding (GO:0032508)
      stress granule assembly (GO:0034063)
      intracellular signal transduction (GO:0035556)
      ribosome biogenesis (GO:0042254)
      mature ribosome assembly (GO:0042256)
      positive regulation of apoptotic process (GO:0043065)
      negative regulation of apoptotic process (GO:0043066)
      negative regulation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0043154)
      positive regulation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0043280)
      innate immune response (GO:0045087)
      positive regulation of translation (GO:0045727)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of translational initiation (GO:0045948)
      cellular response to arsenic-containing substance (GO:0071243)
      cellular response to osmotic stress (GO:0071470)
      intrinsic apoptotic signaling pathway (GO:0097193)
      positive regulation of G1/S transition of mitotic cell cycle (GO:1900087)
      negative regulation of intrinsic apoptotic signaling pathway (GO:2001243)
GO_MF
GO_CC
KEGG
  •   1 Terms
      RIG-I-like receptor signaling pathway (mmu04622)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005767
(v2.0)		Ddx3xNM_01002813205
53.517794.5594199.604172.243249.091183.03366.5271137.563288.497161.566
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005767
(v2.0)		Ddx3x13205
389/2200.3082235/220-0.0209312/2204.0323897/2203.344118/220-1.5027165/220-1.0077
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2005767
(v2.0)		Ddx3x13205
223/1080.5291121/1080.0473307/1084.9593809/1084.20495/108-2.166744/108-1.8593
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2005767
(v2.0)		Ddx3x13205
32.764112626
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2005767
(v2.0)		Ddx3x13205
4.2858864.98
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A