DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2006117
GeneDnmt3a
Synonyms
DescriptionDNA methyltransferase 3A
LocusNM_007872 UCSC: chr12:3806980-3914443(+) OLP: chr12:3806980-3914443(+)
NM_001271753 UCSC: chr12:3807160-3914443(+) OLP: chr12:3807160-3914443(+)
NM_153743 UCSC: chr12:3891744-3914443(+) OLP: chr12:3891744-3914443(+)
DB links


Entrez 13435
MGI 1261827
Ensembl ENSMUSG00000020661
Vega OTTMUSG00000037610
Featureprotein-coding
GO_BP
  •   18 Terms
GO_MF
GO_CC
KEGG
  •   2 Terms
Ver2_FPKM
Log10 (FPKM+1)
1.534
SPR
1.584
Oo
1.795
1C
1.075
2C
1.103
4C
1.033
ESC
0.701
MEF
1.849
p1C
1.124
p4C
1.309
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2006117
(v2.0)		Dnmt3aNM_001271753,NM_007872,NM_15374313435
33.171937.33561.408910.877311.67529.798174.0284769.633812.311319.3497
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.195
H3.3
Rep.1
-0.292
H3.3
Rep.2
1.697
H3K4me3
Rep.1
0.683
H3K4me3
Rep.2
0.261
H3K27me3
Rep.1
0.574
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2006117
(v2.0)		Dnmt3a13435
879/5380.1951476/538-0.2922146/5381.6971344/5380.6835155/5380.26061214/5380.5739
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.818
H3.3
Rep.1
0.153
H3.3
Rep.2
3.07
H3K4me3
Rep.1
2.048
H3K4me3
Rep.2
1.009
H3K27me3
Rep.1
1.169
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2006117
(v2.0)		Dnmt3a13435
454/1800.8184217/1800.1527132/1803.0704299/1802.048288/1801.0087615/1801.1688
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2006117
(v2.0)		Dnmt3a13435
63.055712152.11
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2006117
(v2.0)		Dnmt3a13435
9.19526314.6
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0006188
(v1.0)		9810H3086G02-3Dnmt3a13435
U013709NAP092564-001Dnmt3a;TC892740O88508U,F,23.10112.95222.9933.01233.32683.12443.2072
0006188
(v1.0)		11794H3123C02-3Mm.5001Dnmt3a13435
U013709NAP092564-001Dnmt3a;TC909399O88508U,F,22.65942.62952.40912.47992.16932.2342.2775
MOE430 N/A
Agilent44K N/A
Proteome N/A