| Gene | Ercc4 |
| Synonyms | Xpf |
| Description | excision repair cross-complementing rodent repair deficiency, complementation group 4 |
| Locus | NM_015769 UCSC: chr16:13109829-13152102(+) OLP: chr16:13109829-13152102(+)
|
| DB links |
Entrez 50505
MGI 1354163
|
| Feature | protein-coding |
| GO_BP |
-
 16 Terms
resolution of meiotic recombination intermediates (GO:0000712)
telomere maintenance (GO:0000723)
double-strand break repair via homologous recombination (GO:0000724)
DNA catabolic process, endonucleolytic (GO:0000737)
DNA metabolic process (GO:0006259)
DNA repair (GO:0006281)
nucleotide-excision repair (GO:0006289)
nucleotide-excision repair, DNA incision, 3'-to lesion (GO:0006295)
nucleotide-excision repair, DNA incision, 5'-to lesion (GO:0006296)
cellular response to DNA damage stimulus (GO:0006974)
response to UV (GO:0009411)
UV protection (GO:0009650)
telomere maintenance via telomere shortening (GO:0010834)
negative regulation of telomere maintenance (GO:0032205)
nucleotide-excision repair, DNA incision (GO:0033683)
nucleotide-excision repair involved in interstrand cross-link repair (GO:1901255)
|
| GO_MF |
-
17 Terms
|
| GO_CC |
-
6 Terms
|
| KEGG |
-
1 Terms
|
| Ver2_FPKM |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | ESC_FPKM | MEF_FPKM | p1C_FPKM | p4C_FPKM | iPSC_FPKM |
|---|
2006766
(v2.0) | Ercc4 | NM_015769 | 50505
| 3.62105 | 3.05853 | 4.68332 | 4.91631 | 5.21601 | 3.61481 | 2.29547 | 4.67236 | 5.95379 | 5.90787 |
|
| SPR_Histone_Erkek_5KaroundTSS |
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2006766
(v2.0) | Ercc4 | 50505
| 552/389 | -0.0079 | 349/389 | -0.272 | 149/389 | 2.1819 | 355/389 | 1.1941 | 43/389 | -1.1018 | 361/389 | -0.7048 |
|
| SPR_Histone_Erkek_2KaroundTSS |
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2006766
(v2.0) | Ercc4 | 50505
| 331/205 | 0.1776 | 171/205 | -0.3757 | 145/205 | 3.0284 | 332/205 | 2.0136 | 22/205 | -1.1271 | 196/205 | -0.66 |
|
| SPR_Methy_Kobayashi_5KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2006766
(v2.0) | Ercc4 | 50505
| 69.0331 | 165 | 41.84 |
|
| SPR_Methy_Kobayashi_2KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2006766
(v2.0) | Ercc4 | 50505
| 26.9086 | 121 | 22.24 |
|
| SOLiD_OocyteTo4C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno1C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno4C_FPKM_gene_guided |
N/A |
| Illumina_Oo_2C_FPKM_gene_guided |
N/A |
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
N/A |
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0006840
(v1.0) | 2655 | C0348G09-3 | Mm.37682 | Ercc4 | 50505
| | | Ercc4 | | | | 2.889 | 2.9485 | 3.1055 | 2.9993 | 2.8623 | 3.0819 | 2.9546 |
|
| MOE430 |
N/A |
| Agilent44K |
N/A |
| Proteome |
N/A |
