DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2009815
GeneHdac6
SynonymsmHDA2
Sfc6
Descriptionhistone deacetylase 6
LocusNM_001130416 UCSC: chrX:7507248-7525015(-) OLP: chrX:7507248-7525015(-)
NM_010413 UCSC: chrX:7507248-7525015(-) OLP: chrX:7507248-7525015(-)
DB links


Entrez 15185
MGI 1333752
Ensembl ENSMUSG00000031161
Vega OTTMUSG00000017170
Featureprotein-coding
GO_BP
  •   35 Terms
      protein polyubiquitination (GO:0000209)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      protein deacetylation (GO:0006476)
      ubiquitin-dependent protein catabolic process (GO:0006511)
      misfolded or incompletely synthesized protein catabolic process (GO:0006515)
      intracellular protein transport (GO:0006886)
      negative regulation of microtubule depolymerization (GO:0007026)
      response to toxic substance (GO:0009636)
      positive regulation of signal transduction (GO:0009967)
      response to organic substance (GO:0010033)
      regulation of receptor activity (GO:0010469)
      positive regulation of epithelial cell migration (GO:0010634)
      positive regulation of receptor biosynthetic process (GO:0010870)
      macroautophagy (GO:0016236)
      chromatin modification (GO:0016568)
      histone deacetylation (GO:0016575)
      lysosome localization (GO:0032418)
      peptidyl-lysine deacetylation (GO:0034983)
      cellular response to topologically incorrect protein (GO:0035967)
      ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (GO:0043162)
      protein complex disassembly (GO:0043241)
      negative regulation of protein complex disassembly (GO:0043242)
      negative regulation of proteolysis (GO:0045861)
      response to misfolded protein (GO:0051788)
      regulation of establishment of protein localization (GO:0070201)
      cellular response to hydrogen peroxide (GO:0070301)
      aggresome assembly (GO:0070842)
      polyubiquitinated misfolded protein transport (GO:0070845)
      Hsp90 deacetylation (GO:0070846)
      response to growth factor (GO:0070848)
      cellular response to misfolded protein (GO:0071218)
      positive regulation of chaperone-mediated protein complex assembly (GO:0090035)
      tubulin deacetylation (GO:0090042)
      positive regulation of hydrogen peroxide-mediated programmed cell death (GO:1901300)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009815
(v2.0)		Hdac6NM_001130416,NM_01041315185
83.842713.949.3320725.313320.87323.628314.95127.2996723.272617.7235
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2009815
(v2.0)		Hdac615185
343/2380.0144221/238-0.222160/2381.5652183/2380.94498/238-2.6921146/238-1.2955
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2009815
(v2.0)		Hdac615185
148/1030.0175/103-0.567156/1032.5868160/1031.94091/103-3.685930/103-2.3218
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2009815
(v2.0)		Hdac615185
100.37416859.75
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2009815
(v2.0)		Hdac615185
21.41418425.49
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0009932
(v1.0)		21848L0919C12-3Mm.29854Hdac615185
U039235NAP096746-001Hdac6;TC805231,TC805230Q9Z2V53.51383.36523.38453.66664.00053.64933.8747
MOE430 N/A
Agilent44K N/A
Proteome N/A