DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2010017
GeneHmgb1
Synonymsamphoterin
DEF
HMG-1
Hmg1
p30
SBP-1
Descriptionhigh mobility group box 1
LocusNM_010439 UCSC: chr5:149858804-149864613(-) OLP: chr5:149858804-149864613(-)
DB links


Entrez 15289
MGI 96113
Ensembl ENSMUSG00000066551
Vega OTTMUSG00000016672
Featureprotein-coding
GO_BP
  •   13 Terms
      eye development (GO:0001654)
      positive regulation of protein phosphorylation (GO:0001934)
      positive regulation of mesenchymal cell proliferation (GO:0002053)
      lung development (GO:0030324)
      positive regulation of cell migration (GO:0030335)
      DNA geometric change (GO:0032392)
      positive regulation of myeloid cell differentiation (GO:0045639)
      positive regulation of glycogen catabolic process (GO:0045819)
      positive regulation of protein kinase activity (GO:0045860)
      positive regulation of mitotic cell cycle (GO:0045931)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      induction of positive chemotaxis (GO:0050930)
      response to glucocorticoid (GO:0051384)
GO_MF
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010017
(v2.0)		Hmgb1NM_01043915289
29.167629.045545.572392.629187.251345.834154.5829.6673184.816412.45
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010017
(v2.0)		Hmgb115289
609/3160.4325373/3160.1227139/3162.3722353/3161.483768/316-0.1564521/3160.1216
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010017
(v2.0)		Hmgb115289
381/1231.112171/1230.3566135/1233.6103292/1232.554325/123-0.2323284/1230.6039
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010017
(v2.0)		Hmgb115289
39.112816423.85
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010017
(v2.0)		Hmgb115289
11.18061298.67
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010134
(v1.0)		6528H3026F10-3Mm.16421Hmgb115289
NAP031368-13.40653.3093.24383.40473.36693.40713.3549
MOE430 N/A
Agilent44K N/A
Proteome N/A