DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2010302
GeneIdh3b
Synonyms
Descriptionisocitrate dehydrogenase 3 (NAD+) beta
LocusNM_130884 UCSC: chr2:130105045-130110187(-) OLP: chr2:130105045-130110187(-)
DB links


Entrez 170718
MGI 2158650
Ensembl ENSMUSG00000027406
Vega OTTMUSG00000015521
Featureprotein-coding
GO_BP
GO_MF
  •   2 Terms
GO_CC
KEGG
  •   2 Terms
Ver2_FPKM
Log10 (FPKM+1)
1.719
SPR
0.984
Oo
0.829
1C
1.457
2C
1.943
4C
2.244
ESC
1.67
MEF
0.832
p1C
1.935
p4C
2.246
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010302
(v2.0)		Idh3bNM_130884170718
51.32998.647885.7518827.6786.7107174.55445.77835.790985.1712175.173
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.06
H3.3
Rep.1
-0.279
H3.3
Rep.2
1.313
H3K4me3
Rep.1
0.33
H3K4me3
Rep.2
-0.709
H3K27me3
Rep.1
-0.363
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010302
(v2.0)		Idh3b170718
665/486-0.0603434/486-0.2788101/4861.3131243/4860.329871/486-0.7094572/486-0.3634
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.444
H3.3
Rep.1
0.167
H3.3
Rep.2
2.75
H3K4me3
Rep.1
1.823
H3K4me3
Rep.2
-0.851
H3K27me3
Rep.1
-0.979
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010302
(v2.0)		Idh3b170718
313/1610.4439196/1610.166695/1612.7503229/1611.823521/161-0.8505123/161-0.979
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010302
(v2.0)		Idh3b170718
76.329113158.27
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010302
(v2.0)		Idh3b170718
20.82097129.33
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010411
(v1.0)		6967H3039E07-5Idh3b170718
Idh3b2.88272.91812.77152.80043.18052.92973.0548
MOE430 N/A
Agilent44K N/A
Proteome N/A