DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2011480
GeneLdb1
SynonymsCLIM2
DescriptionLIM domain binding 1
LocusNM_010697 UCSC: chr19:46107091-46114111(-) OLP: chr19:46107091-46114111(-)
NM_001113408 UCSC: chr19:46107091-46119701(-) OLP: chr19:46107091-46119701(-)
DB links


Entrez 16825
MGI 894762
Ensembl ENSMUSG00000025223
Vega OTTMUSG00000033442
Featureprotein-coding
GO_BP
  •   22 Terms
      transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery (GO:0000972)
      gastrulation with mouth forming second (GO:0001702)
      hair follicle development (GO:0001942)
      transcription from RNA polymerase II promoter (GO:0006366)
      multicellular organismal development (GO:0007275)
      anterior/posterior axis specification (GO:0009948)
      epithelial structure maintenance (GO:0010669)
      Wnt signaling pathway (GO:0016055)
      cerebellum development (GO:0021549)
      cerebellar Purkinje cell differentiation (GO:0021702)
      cellular component assembly (GO:0022607)
      regulation of DNA-templated transcription, elongation (GO:0032784)
      somatic stem cell maintenance (GO:0035019)
      histone H3-K4 acetylation (GO:0043973)
      negative regulation of erythrocyte differentiation (GO:0045647)
      positive regulation of cell adhesion (GO:0045785)
      negative regulation of transcription, DNA-templated (GO:0045892)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of hemoglobin biosynthetic process (GO:0046985)
      primitive erythrocyte differentiation (GO:0060319)
      head development (GO:0060322)
      regulation of RNA biosynthetic process (GO:2001141)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011480
(v2.0)		Ldb1NM_001113408,NM_01069716825
35.6326134.501160.03531.790971.417867.775841.6203266.04674.437861.3987
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011480
(v2.0)		Ldb116825
674/4190.1726374/419-0.2794166/4192.2328428/4191.3567108/4190.1009793/4190.3203
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011480
(v2.0)		Ldb116825
364/1670.6083199/1670.1359134/1673.193355/1672.401791/1671.1621561/1671.1441
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011480
(v2.0)		Ldb116825
110.59117662.84
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011480
(v2.0)		Ldb116825
29.8057838.21
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011541
(v1.0)		9200H3077H06-3Mm.4524Ldb116825
U039101NAP010011-001Ldb1;TC898071,TC898070O55204U,F,24.21854.17884.43244.52294.58384.57994.5835
MOE430 N/A
Agilent44K N/A
Proteome N/A