DBTMEE

DBTMEE:2011578

Gene

Limk2

Synonyms

LIM kinase 2
Limk2a
Limk2b

Description

LIM motif-containing protein kinase 2

Locus

NM_010718 UCSC: chr11:3243300-3309241(-) OLP: chr11:3243300-3309241(-)
NM_173053 UCSC: chr11:3243300-3271395(-) OLP: chr11:3243300-3271395(-)
NM_001034030 UCSC: chr11:3243300-3256144(-) OLP: chr11:3243300-3256144(-)

DB links

Entrez 16886
MGI 1197517
Ensembl ENSMUSG00000020451
Vega OTTMUSG00000000764

Feature

protein-coding

GO_BP

3 Terms

GO_MF

10 Terms

GO_CC

3 Terms

KEGG

3 Terms

Ver2_FPKM

Log10 (FPKM+1)

1.108

SPR

1.425

1.487

1.017

0.739

1.329

ESC

0.784

MEF

1.505

p1C

0.816

p4C

1.313

iPSC

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2011578 (v2.0)	Limk2	NM_001034030,NM_010718,NM_173053	16886	11.8087	25.622	29.6988	9.40416	4.48277	20.3392	5.08581	30.9872	5.54187	19.5422

SPR_Histone_Erkek_5KaroundTSS

Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)

-0.084

H3.3
Rep.1

-0.37

H3.3
Rep.2

-0.456

H3K4me3
Rep.1

-0.837

H3K4me3
Rep.2

-3.022

H3K27me3
Rep.1

-2.654

H3K27me3
Rep.2

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2011578 (v2.0)	Limk2	16886	723/537	-0.0836	450/537	-0.3704	32/537	-0.4556	119/537	-0.8373	15/537	-3.0221	128/537	-2.6538

SPR_Histone_Erkek_2KaroundTSS

Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)

-0.036

H3.3
Rep.1

-0.179

H3.3
Rep.2

0.445

H3K4me3
Rep.1

0.343

H3K4me3
Rep.2

-2.328

H3K27me3
Rep.1

-2.501

H3K27me3
Rep.2

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2011578 (v2.0)	Limk2	16886	256/184	-0.0362	176/184	-0.1793	21/184	0.4448	93/184	0.3427	8/184	-2.3281	48/184	-2.5009

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2011578 (v2.0)	Limk2	16886	113.926	120	94.94

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2011578 (v2.0)	Limk2	16886	34.9258	38	91.91

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

NIA60mer

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0011638 (v1.0)	3099	C0601E07-3	Mm.42927	Limk2	16886	U032431	NAP107330-1	Limk2;	TC898218	O54776	U,F,2	2.3821	2.594	2.5463	2.5439	2.3944	2.4392	2.4174
0011638 (v1.0)	10908	H3105C10-3	Mm.42927	Limk2	16886	U032431	NAP094011-001	Limk2;	TC898217,TC898216	O54776	U,F,2	3.4553	3.3501	3.1591	3.1828	3.2195	3.2287	3.2917
0011638 (v1.0)	16031	K0322C02-3		Limk2	16886	U032431	NAP094011-001	Limk2;	TC898217,TC898216	O54776	U,F,2	2.7108	2.8281	2.7103	2.78	2.4619	2.7438	2.7663

MOE430

N/A

Agilent44K

N/A

Proteome

N/A