| Gene | Lims1 |
| Synonyms | Lims1l
PINCH1 |
| Description | LIM and senescent cell antigen-like domains 1 |
| Locus | NM_026148 UCSC: chr10:57786214-57887439(+) OLP: chr10:57786214-57887439(+)
NM_201242 UCSC: chr10:57834202-57887439(+) OLP: chr10:57834202-57887439(+)
NM_001193303 UCSC: chr10:57857121-57887439(+) OLP: chr10:57857121-57887439(+)
|
| DB links |
Entrez 110829
MGI 1195263
Ensembl ENSMUSG00000019920
Vega OTTMUSG00000024823
|
| Feature | protein-coding |
| GO_BP |
-
 12 Terms
cell-matrix adhesion (GO:0007160)
establishment or maintenance of cell polarity (GO:0007163)
single organismal cell-cell adhesion (GO:0016337)
chordate embryonic development (GO:0043009)
negative regulation of apoptotic process (GO:0043066)
cell-cell junction organization (GO:0045216)
negative regulation of transcription, DNA-templated (GO:0045892)
negative regulation of epithelial cell proliferation (GO:0050680)
protein heterooligomerization (GO:0051291)
negative regulation of neural precursor cell proliferation (GO:2000178)
negative regulation of hepatocyte proliferation (GO:2000346)
positive regulation of integrin-mediated signaling pathway (GO:2001046)
|
| GO_MF |
-
3 Terms
|
| GO_CC |
-
6 Terms
|
| KEGG | |
| Ver2_FPKM |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | ESC_FPKM | MEF_FPKM | p1C_FPKM | p4C_FPKM | iPSC_FPKM |
|---|
2011579
(v2.0) | Lims1 | NM_001193303,NM_026148,NM_201242 | 110829
| 8.53643 | 4.22272 | 9.63799 | 11.6018 | 9.05689 | 15.9883 | 17.2435 | 6.78331 | 7.08764 | 14.3293 |
|
| SPR_Histone_Erkek_5KaroundTSS |
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2011579
(v2.0) | Lims1 | 110829
| 499/398 | -0.186 | 361/398 | -0.2563 | 27/398 | -0.2715 | 89/398 | -0.8226 | 4/398 | -4.2719 | 72/398 | -3.0396 |
|
| SPR_Histone_Erkek_2KaroundTSS |
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2011579
(v2.0) | Lims1 | 110829
| 224/180 | -0.1961 | 153/180 | -0.3485 | 20/180 | 0.4074 | 77/180 | 0.1048 | 1/180 | -4.4671 | 26/180 | -3.317 |
|
| SPR_Methy_Kobayashi_5KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2011579
(v2.0) | Lims1 | 110829
| 45.6369 | 92 | 49.61 |
|
| SPR_Methy_Kobayashi_2KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2011579
(v2.0) | Lims1 | 110829
| 14.841 | 58 | 25.59 |
|
| SOLiD_OocyteTo4C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno1C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno4C_FPKM_gene_guided |
N/A |
| Illumina_Oo_2C_FPKM_gene_guided |
N/A |
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
N/A |
| NIA60mer |
N/A |
| MOE430 |
N/A |
| Agilent44K |
N/A |
| Proteome |
N/A |
