DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2011579
GeneLims1
SynonymsLims1l
PINCH1
DescriptionLIM and senescent cell antigen-like domains 1
LocusNM_026148 UCSC: chr10:57786214-57887439(+) OLP: chr10:57786214-57887439(+)
NM_201242 UCSC: chr10:57834202-57887439(+) OLP: chr10:57834202-57887439(+)
NM_001193303 UCSC: chr10:57857121-57887439(+) OLP: chr10:57857121-57887439(+)
DB links


Entrez 110829
MGI 1195263
Ensembl ENSMUSG00000019920
Vega OTTMUSG00000024823
Featureprotein-coding
GO_BP
  •   12 Terms
      cell-matrix adhesion (GO:0007160)
      establishment or maintenance of cell polarity (GO:0007163)
      single organismal cell-cell adhesion (GO:0016337)
      chordate embryonic development (GO:0043009)
      negative regulation of apoptotic process (GO:0043066)
      cell-cell junction organization (GO:0045216)
      negative regulation of transcription, DNA-templated (GO:0045892)
      negative regulation of epithelial cell proliferation (GO:0050680)
      protein heterooligomerization (GO:0051291)
      negative regulation of neural precursor cell proliferation (GO:2000178)
      negative regulation of hepatocyte proliferation (GO:2000346)
      positive regulation of integrin-mediated signaling pathway (GO:2001046)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011579
(v2.0)		Lims1NM_001193303,NM_026148,NM_201242110829
8.536434.222729.6379911.60189.0568915.988317.24356.783317.0876414.3293
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011579
(v2.0)		Lims1110829
499/398-0.186361/398-0.256327/398-0.271589/398-0.82264/398-4.271972/398-3.0396
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011579
(v2.0)		Lims1110829
224/180-0.1961153/180-0.348520/1800.407477/1800.10481/180-4.467126/180-3.317
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011579
(v2.0)		Lims1110829
45.63699249.61
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011579
(v2.0)		Lims1110829
14.8415825.59
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A