DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2011588
GeneLin7c
SynonymsD2Ertd520e
LIN-7-C
LIN-7C
Lin7c
MALS-3
Veli3
Descriptionlin-7 homolog C (C. elegans)
LocusNM_011699 UCSC: chr2:109731035-109741093(+) OLP: chr2:109731035-109741093(+)
DB links


Entrez 22343
MGI 1330839
Ensembl ENSMUSG00000027162
Vega OTTMUSG00000015123
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.219
SPR
1.131
Oo
1.321
1C
1.437
2C
1.621
4C
1.616
ESC
1.213
MEF
1.209
p1C
1.511
p4C
1.605
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011588
(v2.0)		Lin7cNM_01169922343
15.569112.525319.95726.347440.825940.310615.347115.165731.43839.2925
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.181
H3.3
Rep.1
0.096
H3.3
Rep.2
2.058
H3K4me3
Rep.1
1.141
H3K4me3
Rep.2
0.009
H3K27me3
Rep.1
-0.267
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011588
(v2.0)		Lin7c22343
683/4220.1814489/4220.0962148/4222.0582371/4221.1408102/4220.009531/422-0.2672
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.345
H3.3
Rep.1
0.292
H3.3
Rep.2
3.159
H3K4me3
Rep.1
2.18
H3K4me3
Rep.2
-1.214
H3K27me3
Rep.1
-1.607
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011588
(v2.0)		Lin7c22343
343/1890.3454251/1890.2917147/1893.1585344/1892.180419/189-1.21493/189-1.6067
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011588
(v2.0)		Lin7c22343
44.599411140.18
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011588
(v2.0)		Lin7c22343
9.94957413.45
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011648
(v1.0)		7618H3050G09-3Mm.235300Lin7c22343
U002220NAP092845-001AU019331;TC910107Q99KF6U,F,23.84614.02623.59983.66133.44853.34143.3086
MOE430 N/A
Agilent44K N/A
Proteome N/A