DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2011716
GeneLrp6
SynonymsCd
Descriptionlow density lipoprotein receptor-related protein 6
LocusNM_008514 UCSC: chr6:134396496-134516931(-) OLP: chr6:134396496-134516931(-)
DB links


Entrez 16974
MGI 1298218
Ensembl ENSMUSG00000030201
Vega OTTMUSG00000021240
Featureprotein-coding
GO_BP
  •   93 Terms
      gastrulation with mouth forming second (GO:0001702)
      somitogenesis (GO:0001756)
      neural tube closure (GO:0001843)
      negative regulation of protein phosphorylation (GO:0001933)
      heart looping (GO:0001947)
      morphogenesis of an epithelium (GO:0002009)
      positive regulation of mesenchymal cell proliferation (GO:0002053)
      pericardium morphogenesis (GO:0003344)
      axis elongation (GO:0003401)
      regulation of transcription, DNA-templated (GO:0006355)
      negative regulation of protein kinase activity (GO:0006469)
      endocytosis (GO:0006897)
      receptor-mediated endocytosis (GO:0006898)
      positive regulation of cytosolic calcium ion concentration (GO:0007204)
      synaptic transmission (GO:0007268)
      multicellular organismal development (GO:0007275)
      embryonic pattern specification (GO:0009880)
      dorsal/ventral axis specification (GO:0009950)
      anterior/posterior pattern specification (GO:0009952)
      neural crest formation (GO:0014029)
      neural crest cell differentiation (GO:0014033)
      Wnt signaling pathway (GO:0016055)
      single organismal cell-cell adhesion (GO:0016337)
      cerebellum morphogenesis (GO:0021587)
      thalamus development (GO:0021794)
      cerebral cortex cell migration (GO:0021795)
      forebrain radial glial cell differentiation (GO:0021861)
      forebrain generation of neurons (GO:0021872)
      Wnt signaling pathway involved in forebrain neuroblast division (GO:0021874)
      neural tube development (GO:0021915)
      formation of radial glial scaffolds (GO:0021943)
      cerebral cortex development (GO:0021987)
      negative regulation of Wnt signaling pathway (GO:0030178)
      embryonic limb morphogenesis (GO:0030326)
      forebrain development (GO:0030900)
      midbrain development (GO:0030901)
      midbrain-hindbrain boundary development (GO:0030917)
      negative regulation of smooth muscle cell apoptotic process (GO:0034392)
      limb morphogenesis (GO:0035108)
      embryonic forelimb morphogenesis (GO:0035115)
      embryonic hindlimb morphogenesis (GO:0035116)
      external genitalia morphogenesis (GO:0035261)
      post-anal tail morphogenesis (GO:0036342)
      cell migration involved in gastrulation (GO:0042074)
      regulation of cell proliferation (GO:0042127)
      odontogenesis of dentin-containing tooth (GO:0042475)
      embryonic digit morphogenesis (GO:0042733)
      positive regulation of apoptotic process (GO:0043065)
      Wnt signaling pathway involved in dorsal/ventral axis specification (GO:0044332)
      negative regulation of fat cell differentiation (GO:0045599)
      positive regulation of ossification (GO:0045778)
      positive regulation of bone resorption (GO:0045780)
      positive regulation of cell cycle (GO:0045787)
      positive regulation of transcription, DNA-templated (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      bone remodeling (GO:0046849)
      embryonic camera-type eye morphogenesis (GO:0048596)
      generation of neurons (GO:0048699)
      skeletal system morphogenesis (GO:0048705)
      negative regulation of epithelial cell proliferation (GO:0050680)
      positive regulation of sequence-specific DNA binding transcription factor activity (GO:0051091)
      response to folic acid (GO:0051593)
      palate development (GO:0060021)
      convergent extension (GO:0060026)
      retina morphogenesis in camera-type eye (GO:0060042)
      embryonic retina morphogenesis in camera-type eye (GO:0060059)
      canonical Wnt signaling pathway (GO:0060070)
      regulation of cell development (GO:0060284)
      face morphogenesis (GO:0060325)
      bone morphogenesis (GO:0060349)
      branching involved in mammary gland duct morphogenesis (GO:0060444)
      trachea cartilage morphogenesis (GO:0060535)
      mammary placode formation (GO:0060596)
      mammary gland duct morphogenesis (GO:0060603)
      canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development (GO:0061310)
      canonical Wnt signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation (GO:0061324)
      cellular response to cholesterol (GO:0071397)
      dopaminergic neuron differentiation (GO:0071542)
      negative regulation of protein serine/threonine kinase activity (GO:0071901)
      primitive streak formation (GO:0090009)
      receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport (GO:0090118)
      Wnt signaling pathway involved in somitogenesis (GO:0090244)
      axis elongation involved in somitogenesis (GO:0090245)
      positive regulation of canonical Wnt signaling pathway (GO:0090263)
      toxin transport (GO:1901998)
      negative regulation of non-canonical Wnt signaling pathway (GO:2000051)
      positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification (GO:2000055)
      negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis (GO:2000149)
      negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis (GO:2000151)
      negative regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis (GO:2000162)
      negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis (GO:2000164)
      negative regulation of planar cell polarity pathway involved in pericardium morphogenesis (GO:2000166)
      negative regulation of planar cell polarity pathway involved in neural tube closure (GO:2000168)
GO_MF
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011716
(v2.0)		Lrp6NM_00851416974
8.3048459.836589.622554.076929.22245.2636317.063385.952528.00724.70685
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011716
(v2.0)		Lrp616974
661/3900.2478434/3900.0379120/3901.8684256/3900.7203103/3900.1356747/3900.3375
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011716
(v2.0)		Lrp616974
355/1550.6792210/1550.3201116/1553.0866221/1551.826340/1550.101264/1550.1679
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011716
(v2.0)		Lrp616974
44.120510641.62
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011716
(v2.0)		Lrp616974
12.64656818.6
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A