DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2012007
GeneMap1lc3a
SynonymsLC3
LC3a
Descriptionmicrotubule-associated protein 1 light chain 3 alpha
LocusNM_025735 UCSC: chr2:155102100-155103809(+) OLP: chr2:155102100-155103809(+)
NR_046364 UCSC: chr2:155102100-155103809(+) OLP: chr2:155102100-155103809(+)
DB links


Entrez 66734
MGI 1915661
Ensembl ENSMUSG00000027602
Vega OTTMUSG00000016007
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
2.805
SPR
1.709
Oo
1.353
1C
2.276
2C
2.642
4C
1.642
ESC
1.626
MEF
1.662
p1C
2.491
p4C
1.691
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2012007
(v2.0)		Map1lc3aNM_025735,NR_04636466734
637.08850.151621.5352187.965437.12842.874741.293944.9573309.03748.0713
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.365
H3.3
Rep.1
0.075
H3.3
Rep.2
4.164
H3K4me3
Rep.1
3.497
H3K4me3
Rep.2
-1.338
H3K27me3
Rep.1
-1.252
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2012007
(v2.0)		Map1lc3a66734
844/4590.3652524/4590.0747695/4594.1642070/4593.497243/459-1.3382291/459-1.2525
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.652
H3.3
Rep.1
0.252
H3.3
Rep.2
5.019
H3K4me3
Rep.1
4.182
H3K4me3
Rep.2
-1.702
H3K27me3
Rep.1
-1.318
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2012007
(v2.0)		Map1lc3a66734
447/1990.6521257/1990.2516563/1995.01861453/1994.182314/199-1.7018120/199-1.3182
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2012007
(v2.0)		Map1lc3a66734
78.345814155.56
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2012007
(v2.0)		Map1lc3a66734
16.74687522.33
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A