DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2012380
GeneMib1
SynonymsMib
mind bomb-1
skeletrophin
Descriptionmindbomb homolog 1 (Drosophila)
LocusNM_144860 UCSC: chr18:10725623-10812215(+) OLP: chr18:10725623-10812215(+)
DB links


Entrez 225164
MGI 2443157
Ensembl ENSMUSG00000024294
Featureprotein-coding
GO_BP
GO_MF
  •   15 Terms
      ubiquitin-protein transferase activity (GO:0004842)
      protein binding (GO:0005515)
      zinc ion binding (GO:0008270)
      UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
      ligase activity (GO:0016874)
      ribosomal S6-glutamic acid ligase activity (GO:0018169)
      coenzyme F420-0 gamma-glutamyl ligase activity (GO:0043773)
      coenzyme F420-2 alpha-glutamyl ligase activity (GO:0043774)
      metal ion binding (GO:0046872)
      protein-glycine ligase activity (GO:0070735)
      protein-glycine ligase activity, initiating (GO:0070736)
      protein-glycine ligase activity, elongating (GO:0070737)
      tubulin-glycine ligase activity (GO:0070738)
      protein-glutamic acid ligase activity (GO:0070739)
      tubulin-glutamic acid ligase activity (GO:0070740)
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.388
SPR
0.856
Oo
1.047
1C
1.567
2C
1.638
4C
0.374
ESC
1.231
MEF
0.999
p1C
1.605
p4C
0.216
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2012380
(v2.0)		Mib1NM_144860225164
23.44566.1861210.141335.917342.40881.3661816.00828.973139.25490.644981
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.101
H3.3
Rep.1
0.092
H3.3
Rep.2
2.098
H3K4me3
Rep.1
1.095
H3K4me3
Rep.2
0.96
H3K27me3
Rep.1
0.728
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2012380
(v2.0)		Mib1225164
580/3790.1008438/3790.0923137/3792.0981323/3791.0955178/3790.9598952/3790.7279
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.606
H3.3
Rep.1
0.312
H3.3
Rep.2
3.331
H3K4me3
Rep.1
2.267
H3K4me3
Rep.2
-0.095
H3K27me3
Rep.1
0.166
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2012380
(v2.0)		Mib1225164
320/1470.6061198/1470.3116131/1473.3314285/1472.26733/147-0.0947250/1470.1657
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2012380
(v2.0)		Mib1225164
35.81129039.79
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2012380
(v2.0)		Mib1225164
8.19676113.44
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A