DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2013794
GeneMrto4
SynonymsMrt4
DescriptionMRT4, mRNA turnover 4, homolog (S. cerevisiae)
LocusNM_001290810 UCSC: chr4:138903355-138908491(-) OLP: chr4:138903355-138908491(-)
NM_023536 UCSC: chr4:138903355-138908491(-) OLP: chr4:138903355-138908491(-)
DB links


Entrez 69902
MGI 1917152
Ensembl ENSMUSG00000028741
Vega OTTMUSG00000009954
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.384
SPR
1.772
Oo
1.564
1C
2.046
2C
2.211
4C
2.034
ESC
1.31
MEF
1.776
p1C
2.279
p4C
2.179
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2013794
(v2.0)		Mrto4NM_001290810,NM_02353669902
23.196958.162235.6843110.141161.539107.19719.410358.7597188.904149.969
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.057
H3.3
Rep.1
-0.261
H3.3
Rep.2
2.43
H3K4me3
Rep.1
1.192
H3K4me3
Rep.2
-2.865
H3K27me3
Rep.1
-2.347
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2013794
(v2.0)		Mrto469902
714/4810.057435/481-0.2606218/4812.43438/4811.191915/481-2.8645142/481-2.3472
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.147
H3.3
Rep.1
-0.088
H3.3
Rep.2
3.527
H3K4me3
Rep.1
2.3
H3K4me3
Rep.2
-3.1
H3K27me3
Rep.1
-2.331
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2013794
(v2.0)		Mrto469902
332/2100.1473214/210-0.0885210/2103.5269415/2102.30035/210-3.099862/210-2.3314
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2013794
(v2.0)		Mrto469902
102.25216860.86
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2013794
(v2.0)		Mrto469902
33.6019734.64
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A