DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2014177
GeneNcapd3
Synonyms
Descriptionnon-SMC condensin II complex, subunit D3
LocusNM_178113 UCSC: chr9:26837760-26902900(+) OLP: chr9:26837760-26902900(+)
DB links


Entrez 78658
MGI 2142989
Ensembl ENSMUSG00000035024
Featureprotein-coding
GO_BP
GO_MF
  •   1 Terms
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.668
SPR
1.424
Oo
1.295
1C
1.099
2C
1.185
4C
1.148
ESC
1.099
MEF
1.138
p1C
1.214
p4C
1.117
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014177
(v2.0)		Ncapd3NM_17811378658
3.6505325.544918.742111.550514.314313.049511.574212.72715.36312.1008
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0
H3.3
Rep.1
-0.234
H3.3
Rep.2
2.227
H3K4me3
Rep.1
0.978
H3K4me3
Rep.2
0.752
H3K27me3
Rep.1
0.224
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014177
(v2.0)		Ncapd378658
689/483-0.0003445/483-0.2339190/4832.2268379/4830.9778196/4830.7516855/4830.2241
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.405
H3.3
Rep.1
-0.095
H3.3
Rep.2
3.336
H3K4me3
Rep.1
2.132
H3K4me3
Rep.2
0.703
H3K27me3
Rep.1
0.37
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014177
(v2.0)		Ncapd378658
384/2030.4051206/203-0.0946178/2033.3358357/2032.13280/2030.703398/2030.3703
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014177
(v2.0)		Ncapd378658
41.682315227.42
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014177
(v2.0)		Ncapd378658
7.88731136.98
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A