DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2014375
GeneNfyc
Synonyms
Descriptionnuclear transcription factor-Y gamma
LocusNM_001277095 UCSC: chr4:120430040-120498346(-) OLP: chr4:120430040-120498346(-)
NM_001048168 UCSC: chr4:120430040-120504184(-) OLP: chr4:120430040-120504184(-)
NM_008692 UCSC: chr4:120430040-120498346(-) OLP: chr4:120430040-120498346(-)
DB links


Entrez 18046
MGI 107901
Ensembl ENSMUSG00000032897
Vega OTTMUSG00000008852
Featureprotein-coding
GO_BP
  •   3 Terms
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      positive regulation of transcription, DNA-templated (GO:0045893)
GO_MF
  •   6 Terms
GO_CC
KEGG
  •   1 Terms
      Antigen processing and presentation (mmu04612)
Ver2_FPKM
Log10 (FPKM+1)
1.126
SPR
2.113
Oo
2.181
1C
1.968
2C
2.083
4C
1.261
ESC
1.251
MEF
2.255
p1C
2.043
p4C
1.338
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014375
(v2.0)		NfycNM_001048168,NM_001277095,NM_00869218046
12.3586128.688150.74891.877119.93617.248816.8225178.975109.28320.7646
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.128
H3.3
Rep.1
-0.109
H3.3
Rep.2
-1.371
H3K4me3
Rep.1
-2.263
H3K4me3
Rep.2
0.379
H3K27me3
Rep.1
0.606
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014375
(v2.0)		Nfyc18046
517/396-0.1278398/396-0.108612/396-1.371432/396-2.2628124/3960.3791914/3960.6061
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
-0.14
H3.3
Rep.1
-0.336
H3.3
Rep.2
-1.522
H3K4me3
Rep.1
-2.502
H3K4me3
Rep.2
0.615
H3K27me3
Rep.1
0.93
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014375
(v2.0)		Nfyc18046
255/197-0.1398169/197-0.33555/197-1.522313/197-2.501773/1970.615570/1970.9299
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014375
(v2.0)		Nfyc18046
40.851311236.47
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014375
(v2.0)		Nfyc18046
7.2112779.37
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A