DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2014566
GeneNpc1
SynonymsC85354
D18Ertd139e
D18Ertd723e
lcsd
nmf164
DescriptionNiemann-Pick type C1
LocusNM_008720 UCSC: chr18:12348203-12394895(-) OLP: chr18:12348203-12394895(-)
DB links


Entrez 18145
MGI 1097712
Ensembl ENSMUSG00000024413
Vega OTTMUSG00000028201
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.689
SPR
1.929
Oo
0.861
1C
0.841
2C
1.137
4C
0.727
ESC
0.762
MEF
0.944
p1C
1.173
p4C
0.646
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014566
(v2.0)		Npc1NM_00872018145
47.833283.87196.259285.9384412.69474.328764.783427.7960813.88613.42257
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.01
H3.3
Rep.1
-0.3
H3.3
Rep.2
1.082
H3K4me3
Rep.1
0.627
H3K4me3
Rep.2
-0.188
H3K27me3
Rep.1
0.017
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014566
(v2.0)		Npc118145
673/475-0.0101418/475-0.299984/4751.0823292/4750.6266100/475-0.1884728/4750.0166
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.284
H3.3
Rep.1
-0.367
H3.3
Rep.2
2.164
H3K4me3
Rep.1
1.716
H3K4me3
Rep.2
-0.251
H3K27me3
Rep.1
0.04
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014566
(v2.0)		Npc118145
346/1990.2839167/199-0.36777/1992.1645262/1991.715540/199-0.2512310/1990.04
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014566
(v2.0)		Npc118145
71.664513951.56
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014566
(v2.0)		Npc118145
26.25669228.54
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014110
(v1.0)		13588J0057H05-3Mm.3484Npc118145
U018422NAP037269-1O35604U,F2.35332.43952.43272.41872.4762.23992.3244
0014110
(v1.0)		18082L0057A04-3Mm.3484Npc118145
U038214NAP092478-001Npc1;TC842264O35604U,F3.27172.76662.37622.15092.4932.66292.5736
MOE430 N/A
Agilent44K N/A
Proteome N/A