DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2016209
GenePalb2
Synonyms
Descriptionpartner and localizer of BRCA2
LocusNM_001081238 UCSC: chr7:129250776-129276460(-) OLP: chr7:129250776-129276460(-)
NM_001289845 UCSC: chr7:129250776-129276460(-) OLP: chr7:129250776-129276460(-)
NM_001289844 UCSC: chr7:129250776-129276460(-) OLP: chr7:129250776-129276460(-)
NM_001289843 UCSC: chr7:129255086-129276460(-) OLP: chr7:129255086-129276460(-)
NM_001289842 UCSC: chr7:129255086-129276460(-) OLP: chr7:129255086-129276460(-)
DB links


Entrez 233826
MGI 3040695
Ensembl ENSMUSG00000044702
Vega OTTMUSG00000022651
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.183
SPR
1.442
Oo
1.691
1C
0.938
2C
1.005
4C
0.829
ESC
0.564
MEF
1.552
p1C
1.034
p4C
0.731
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016209
(v2.0)		Palb2NM_001081238,NM_001289842,NM_001289843,NM_001289844,NM_001289845233826
0.52555226.684248.06717.665139.11085.751032.6669634.62769.821564.37994
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.122
H3.3
Rep.1
0.016
H3.3
Rep.2
2.493
H3K4me3
Rep.1
1.283
H3K4me3
Rep.2
-2.343
H3K27me3
Rep.1
-2.245
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016209
(v2.0)		Palb2233826
584/3760.1221412/3760.0157179/3762.4925365/3761.282817/376-2.3428119/376-2.2447
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.317
H3.3
Rep.1
0.072
H3.3
Rep.2
3.678
H3K4me3
Rep.1
2.53
H3K4me3
Rep.2
-2.403
H3K27me3
Rep.1
-1.872
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016209
(v2.0)		Palb2233826
267/1500.3172171/1500.0724170/1503.6779349/1502.52976/150-2.403261/150-1.8716
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016209
(v2.0)		Palb2233826
65.150613149.73
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016209
(v2.0)		Palb2233826
17.85698122.05
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A