DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2016258
GeneParn
SynonymsDAN
Descriptionpoly(A)-specific ribonuclease (deadenylation nuclease)
LocusNM_028761 UCSC: chr16:13538057-13668263(-) OLP: chr16:13538057-13668263(-)
DB links


Entrez 74108
MGI 1921358
Ensembl ENSMUSG00000022685
Featureprotein-coding
GO_BP
  •   3 Terms
      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
      nuclear-transcribed mRNA poly(A) tail shortening (GO:0000289)
      mRNA catabolic process (GO:0006402)
GO_MF
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
Log10 (FPKM+1)
1.005
SPR
1.224
Oo
1.463
1C
1.061
2C
1.123
4C
1.089
ESC
0.97
MEF
1.377
p1C
1.07
p4C
1.137
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016258
(v2.0)		ParnNM_02876174108
9.1262215.754628.008910.496212.278311.2668.323122.810410.758312.7071
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.043
H3.3
Rep.1
-0.16
H3.3
Rep.2
3.182
H3K4me3
Rep.1
2.218
H3K4me3
Rep.2
-2.825
H3K27me3
Rep.1
-2.659
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016258
(v2.0)		Parn74108
688/4680.043454/468-0.1597358/4683.1816869/4682.218115/468-2.8254111/468-2.6588
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.074
H3.3
Rep.1
-0.153
H3.3
Rep.2
2.976
H3K4me3
Rep.1
2.142
H3K4me3
Rep.2
-2.758
H3K27me3
Rep.1
-2.691
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016258
(v2.0)		Parn74108
290/1930.0743188/193-0.1532132/1932.9759342/1932.14226/193-2.758144/193-2.691
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016258
(v2.0)		Parn74108
47.252716428.81
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016258
(v2.0)		Parn74108
23.03667729.92
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015790
(v1.0)		15380K0133A01-3Mm.182350Parn74108
U036802NAP002668-001Parn;TC836741,TC836739Q9DC463.52533.50813.37913.62293.80863.73593.8341
MOE430 N/A
Agilent44K N/A
Proteome N/A