DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2016393
GenePcgf5
Synonyms
Descriptionpolycomb group ring finger 5
LocusNM_029508 UCSC: chr19:36453557-36530694(+) OLP: chr19:36453557-36530694(+)
DB links


Entrez 76073
MGI 1923505
Ensembl ENSMUSG00000024805
Featureprotein-coding
GO_BP
  •   2 Terms
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.792
SPR
0.827
Oo
0.883
1C
1.869
2C
2.011
4C
1.059
ESC
0.816
MEF
0.675
p1C
2.186
p4C
1.108
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016393
(v2.0)		Pcgf5NM_02950876073
5.191485.711386.6337572.8889101.53710.4645.55153.73073152.48511.8149
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.162
H3.3
Rep.1
-0.423
H3.3
Rep.2
0.849
H3K4me3
Rep.1
0.11
H3K4me3
Rep.2
-0.317
H3K27me3
Rep.1
-0.337
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016393
(v2.0)		Pcgf576073
603/473-0.1621382/473-0.423471/4730.8488203/4730.110491/473-0.317567/473-0.337
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
-0.091
H3.3
Rep.1
-0.305
H3.3
Rep.2
-0.029
H3K4me3
Rep.1
-0.369
H3K4me3
Rep.2
0.242
H3K27me3
Rep.1
0.16
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016393
(v2.0)		Pcgf576073
249/186-0.0915163/186-0.304815/186-0.029357/186-0.369353/1860.2416315/1860.1599
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016393
(v2.0)		Pcgf576073
128.18113793.56
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016393
(v2.0)		Pcgf576073
63.75926598.09
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A