DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2016441
GenePdcd4
SynonymsD19Ucla1
MA-3
TIS
Descriptionprogrammed cell death 4
LocusNM_011050 UCSC: chr19:53966721-54004351(+) OLP: chr19:53966721-54004351(+)
NM_001168491 UCSC: chr19:53977841-54004351(+) OLP: chr19:53977841-54004351(+)
NM_001168492 UCSC: chr19:53977841-54004351(+) OLP: chr19:53977841-54004351(+)
DB links


Entrez 18569
MGI 107490
Ensembl ENSMUSG00000024975
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.456
SPR
1.485
Oo
1.665
1C
1.244
2C
1.026
4C
1.051
ESC
1.214
MEF
1.504
p1C
1.084
p4C
1.033
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016441
(v2.0)		Pdcd4NM_001168491,NM_001168492,NM_01105018569
27.601629.561545.274116.54249.6052610.236715.371630.899911.14719.79185
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.079
H3.3
Rep.1
-0.055
H3.3
Rep.2
2.544
H3K4me3
Rep.1
1.947
H3K4me3
Rep.2
-1.347
H3K27me3
Rep.1
-1.376
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016441
(v2.0)		Pdcd418569
728/4830.0789504/483-0.0547237/4832.5442743/4831.947145/483-1.3469281/483-1.376
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.508
H3.3
Rep.1
0.462
H3.3
Rep.2
3.636
H3K4me3
Rep.1
2.94
H3K4me3
Rep.2
-2.706
H3K27me3
Rep.1
-2.027
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016441
(v2.0)		Pdcd418569
378/1860.508278/1860.4615202/1863.6361574/1862.94026/186-2.70668/186-2.027
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016441
(v2.0)		Pdcd418569
107.52511593.5
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016441
(v2.0)		Pdcd418569
37.6514094.13
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A