DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2017267

Gene

Ppp4r1

Synonyms

Pp4r1

Description

protein phosphatase 4, regulatory subunit 1

Locus

NR_104465 UCSC: chr17:66132695-66191266(+) OLP: chr17:66132695-66191266(+)
NM_001114131 UCSC: chr17:66132695-66191266(+) OLP: chr17:66132695-66191266(+)
NM_146081 UCSC: chr17:66132695-66191266(+) OLP: chr17:66132695-66191266(+)

DB links

Entrez 70351
MGI 1917601
Ensembl ENSMUSG00000061950
Vega OTTMUSG00000034201

Feature

protein-coding

GO_BP

GO_MF

GO_CC

KEGG

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2017267 (v2.0)	Ppp4r1	NM_001114131,NM_146081,NR_104465	70351	24.599	6.80799	9.99653	5.47005	6.09057	9.80694	33.4139	9.02577	6.2245	9.9309

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2017267 (v2.0)	Ppp4r1	70351	844/433	0.4492	603/433	0.3609	975/433	4.7337	3439/433	4.3129	50/433	-1.0418	390/433	-0.748

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2017267 (v2.0)	Ppp4r1	70351	442/145	1.0899	314/145	0.9936	618/145	5.579	1867/145	4.9938	8/145	-1.993	121/145	-0.8524

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2017267 (v2.0)	Ppp4r1	70351	71.3456	161	44.31

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2017267 (v2.0)	Ppp4r1	70351	14.2552	83	17.17

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0016774 (v1.0)	6286	H3022D11-3		Ppp4r1	70351	U018173	NAP097940-001	Ppp4r1;	TC911652,TC820187	Q9CXV4	U,F,2	3.3948	3.3931	3.5189	3.2946	3.2419	3.4752	3.5613
0016774 (v1.0)	15664	K0221B08-3	Mm.222150	Ppp4r1	70351	U042924	NAP036325-1	Ppp4r1;			U	3.5286	3.5746	3.7777	3.554	3.474	3.6391	3.4961

N/A

N/A

N/A