DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2017974
GeneRapgef1
SynonymsC3G
Grf2
DescriptionRap guanine nucleotide exchange factor (GEF) 1
LocusNM_001039086 UCSC: chr2:29475240-29595883(+) OLP: chr2:29475240-29595883(+)
NM_001039087 UCSC: chr2:29475240-29595883(+) OLP: chr2:29475240-29595883(+)
NM_054050 UCSC: chr2:29475240-29595883(+) OLP: chr2:29475240-29595883(+)
DB links


Entrez 107746
MGI 104580
Ensembl ENSMUSG00000039844
Vega OTTMUSG00000012043
Featureprotein-coding
GO_BP
  •   19 Terms
      blood vessel development (GO:0001568)
      signal transduction (GO:0007165)
      positive regulation of signal transduction (GO:0009967)
      positive regulation of neuron projection development (GO:0010976)
      single organismal cell-cell adhesion (GO:0016337)
      Rap protein signal transduction (GO:0032486)
      positive regulation of Rap GTPase activity (GO:0032854)
      nerve growth factor signaling pathway (GO:0038180)
      regulation of GTPase activity (GO:0043087)
      negative regulation of Ras protein signal transduction (GO:0046580)
      platelet-derived growth factor receptor signaling pathway (GO:0048008)
      negative regulation of protein kinase B signaling (GO:0051898)
      establishment of endothelial barrier (GO:0061028)
      negative regulation of ERK1 and ERK2 cascade (GO:0070373)
      cellular response to cAMP (GO:0071320)
      negative regulation of canonical Wnt signaling pathway (GO:0090090)
      regulation of cell junction assembly (GO:1901888)
      cellular response to nerve growth factor stimulus (GO:1990090)
      negative regulation of neural precursor cell proliferation (GO:2000178)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017974
(v2.0)		Rapgef1NM_001039086,NM_001039087,NM_054050107746
40.005518.726323.33195.450886.7464911.674520.530826.95687.0863711.0195
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2017974
(v2.0)		Rapgef1107746
595/476-0.1905328/476-0.6517114/4761.5154414/4761.125853/476-1.0947428/476-0.7506
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2017974
(v2.0)		Rapgef1107746
251/191-0.1181131/191-0.655984/1912.3442278/1911.859115/191-1.5508136/191-1.0809
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2017974
(v2.0)		Rapgef1107746
75.70511565.83
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2017974
(v2.0)		Rapgef1107746
38.40917551.21
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A