DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018035
GeneRbbp5
Synonyms
Descriptionretinoblastoma binding protein 5
LocusNM_172517 UCSC: chr1:134373944-134402242(+) OLP: chr1:134373944-134402242(+)
DB links


Entrez 213464
MGI 1918367
Ensembl ENSMUSG00000026439
Featureprotein-coding
GO_BP
GO_MF
  •   4 Terms
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.927
SPR
1.482
Oo
1.613
1C
1.128
2C
1.305
4C
1.429
ESC
1.059
MEF
1.641
p1C
1.28
p4C
1.378
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018035
(v2.0)		Rbbp5NM_172517213464
7.4453329.305440.004312.417419.176925.866510.448542.709318.049922.8713
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.058
H3.3
Rep.1
-0.004
H3.3
Rep.2
2.1
H3K4me3
Rep.1
1.044
H3K4me3
Rep.2
-2.674
H3K27me3
Rep.1
-2.326
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018035
(v2.0)		Rbbp5213464
577/421-0.0579455/421-0.0041152/4212.0998346/4211.043815/421-2.6741126/421-2.3259
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.054
H3.3
Rep.1
0.002
H3.3
Rep.2
3.33
H3K4me3
Rep.1
2.336
H3K4me3
Rep.2
-3.014
H3K27me3
Rep.1
-2.197
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018035
(v2.0)		Rbbp5213464
243/1640.0541178/1640.002145/1643.3304333/1642.33554/164-3.01453/164-2.1971
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018035
(v2.0)		Rbbp5213464
47.866711641.26
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018035
(v2.0)		Rbbp5213464
14.83388118.31
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A