DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018037
GeneRbbp7
Synonyms
Descriptionretinoblastoma binding protein 7
LocusNM_009031 UCSC: chrX:159198304-159217022(+) OLP: chrX:159198304-159217022(+)
DB links


Entrez 245688
MGI 1194910
Ensembl ENSMUSG00000031353
Vega OTTMUSG00000017256
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.825
SPR
2.795
Oo
2.905
1C
2.233
2C
2.347
4C
1.964
ESC
2.237
MEF
2.708
p1C
2.457
p4C
2.031
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018037
(v2.0)		Rbbp7NM_009031245688
65.8847622.417802.488169.851221.27191.1293171.44509.013285.191106.437
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.602
H3.3
Rep.1
0.257
H3.3
Rep.2
2.742
H3K4me3
Rep.1
1.953
H3K4me3
Rep.2
-1.675
H3K27me3
Rep.1
-1.464
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018037
(v2.0)		Rbbp7245688
395/1820.6024236/1820.2574106/1822.7416283/1821.953413/182-1.675399/182-1.4638
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
1.119
H3.3
Rep.1
0.645
H3.3
Rep.2
3.887
H3K4me3
Rep.1
3.123
H3K4me3
Rep.2
-3.231
H3K27me3
Rep.1
-1.897
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018037
(v2.0)		Rbbp7245688
231/741.119126/740.6446104/743.8868264/743.12341/74-3.230629/74-1.8967
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018037
(v2.0)		Rbbp7245688
50.970712640.45
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018037
(v2.0)		Rbbp7245688
13.24868016.56
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017523
(v1.0)		17884L0028F03-3Mm.1603237081
U020375NAP120741-001Rbbp7TC824374,TC824372,TC824367,TC824363,TC824361Q60973U,F,25.23165.62074.64124.64224.44894.60874.6695
MOE430 N/A
Agilent44K N/A
Proteome N/A