DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018208
GeneRfng
Synonymsradical fringe
DescriptionRFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
LocusNM_009053 UCSC: chr11:120642059-120645518(-) OLP: chr11:120642059-120645518(-)
DB links


Entrez 19719
MGI 894275
Ensembl ENSMUSG00000025158
Vega OTTMUSG00000004135
Featureprotein-coding
GO_BP
  •   7 Terms
GO_MF
  •   4 Terms
      transferase activity (GO:0016740)
      transferase activity, transferring glycosyl groups (GO:0016757)
      O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (GO:0033829)
      metal ion binding (GO:0046872)
GO_CC
KEGG
  •   2 Terms
      Other types of O-glycan biosynthesis (mmu00514)
      Notch signaling pathway (mmu04330)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018208
(v2.0)		RfngNM_00905319719
9.52916.506855.8885511.495814.18819.569063.191949.4674212.80418.76855
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018208
(v2.0)		Rfng19719
835/5360.1265417/536-0.4773125/5361.48292/5360.453244/536-1.5276368/536-1.1386
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018208
(v2.0)		Rfng19719
500/2110.7292215/211-0.0887110/2112.5937273/2111.691112/211-1.9911167/211-0.9305
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018208
(v2.0)		Rfng19719
97.14714268.41
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018208
(v2.0)		Rfng19719
25.48266738.03
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017688
(v1.0)		5171AF015770.1Mm.871Rfng19719
U033734NAP008015-001Rfng;TC826743,TC826741O090091.8681.99431.69951.97012.26551.84172.2264
0017688
(v1.0)		13577J0057D07-3Mm.871Rfng19719
U033734NAP008015-001Rfng;TC826741O090093.63563.58243.8094.02964.00733.99993.9383
MOE430 N/A
Agilent44K N/A
Proteome N/A