DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018451
GeneRnf187
Synonyms
Descriptionring finger protein 187
LocusNM_022423 UCSC: chr11:58745790-58752408(-) OLP: chr11:58745790-58752408(-)
DB links


Entrez 108660
MGI 1914224
Featureprotein-coding
GO_BP
  •   5 Terms
      positive regulation of cell proliferation (GO:0008284)
      proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)
      positive regulation of transcription, DNA-templated (GO:0045893)
      protein autoubiquitination (GO:0051865)
      protein K48-linked ubiquitination (GO:0070936)
GO_MF
  •   14 Terms
      ubiquitin-protein transferase activity (GO:0004842)
      zinc ion binding (GO:0008270)
      UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
      ligase activity (GO:0016874)
      ribosomal S6-glutamic acid ligase activity (GO:0018169)
      coenzyme F420-0 gamma-glutamyl ligase activity (GO:0043773)
      coenzyme F420-2 alpha-glutamyl ligase activity (GO:0043774)
      metal ion binding (GO:0046872)
      protein-glycine ligase activity (GO:0070735)
      protein-glycine ligase activity, initiating (GO:0070736)
      protein-glycine ligase activity, elongating (GO:0070737)
      tubulin-glycine ligase activity (GO:0070738)
      protein-glutamic acid ligase activity (GO:0070739)
      tubulin-glutamic acid ligase activity (GO:0070740)
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.973
SPR
2.028
Oo
2.094
1C
1.469
2C
1.354
4C
1.802
ESC
1.993
MEF
2.298
p1C
1.503
p4C
1.838
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018451
(v2.0)		Rnf187NM_022423108660
92.8795105.663123.0328.46121.607662.407397.346197.49530.847667.9333
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.083
H3.3
Rep.1
-0.32
H3.3
Rep.2
1.358
H3K4me3
Rep.1
0.285
H3K4me3
Rep.2
0.043
H3K27me3
Rep.1
0.041
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018451
(v2.0)		Rnf187108660
733/4850.0828421/485-0.3196104/4851.3578235/4850.2846120/4850.0425756/4850.041
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.26
H3.3
Rep.1
-0.19
H3.3
Rep.2
2.376
H3K4me3
Rep.1
1.301
H3K4me3
Rep.2
-1.146
H3K27me3
Rep.1
-0.979
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018451
(v2.0)		Rnf187108660
371/2170.2598206/217-0.190397/2172.3757214/2171.301323/217-1.1462166/217-0.9794
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018451
(v2.0)		Rnf187108660
67.224311757.46
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018451
(v2.0)		Rnf187108660
16.9356426.46
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A