DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018475
GeneRnf4
SynonymsGtrgeo8
Descriptionring finger protein 4
LocusNM_011278 UCSC: chr5:34679039-34696079(+) OLP: chr5:34679039-34696079(+)
DB links


Entrez 19822
MGI 1201691
Ensembl ENSMUSG00000029110
Vega OTTMUSG00000043581
Featureprotein-coding
GO_BP
  •   14 Terms
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      protein ubiquitination (GO:0016567)
      proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)
      positive regulation of transcription, DNA-templated (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      response to arsenic-containing substance (GO:0046685)
      protein autoubiquitination (GO:0051865)
      protein K63-linked ubiquitination (GO:0070534)
      protein K48-linked ubiquitination (GO:0070936)
      protein K11-linked ubiquitination (GO:0070979)
      protein K6-linked ubiquitination (GO:0085020)
      regulation of spindle assembly (GO:0090169)
      regulation of kinetochore assembly (GO:0090234)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018475
(v2.0)		Rnf4NM_01127819822
34.4453143.4258.762299.006225.791111.92175.8624259.09209.429109.028
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018475
(v2.0)		Rnf419822
741/3500.568554/3500.5451047/3505.13413053/3504.446214/350-2.5036128/350-2.0377
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018475
(v2.0)		Rnf419822
417/1540.9199292/1540.8028925/1546.07972358/1545.24516/154-2.440171/154-1.6953
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018475
(v2.0)		Rnf419822
32.962715221.69
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018475
(v2.0)		Rnf419822
4.94031224.05
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017947
(v1.0)		18388L0205B06-3Mm.21281Rnf419822
U005486NAP092906-001Rnf4;TC841626,TC798914,TC798913Q9QZS2U,F,24.2484.42334.11574.36673.86554.03354.061
0017947
(v1.0)		21228L0840H08-3Mm.21281Rnf419822
U005486NAP031406-1Rnf4;TC798915Q9QZS2U,F,22.95133.09153.53723.52572.90453.17583.0136
MOE430 N/A
Agilent44K N/A
Proteome N/A