DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2019260
GeneSgol2
SynonymsD1Ertd8e
Tripin
Descriptionshugoshin-like 2 (S. pombe)
LocusNM_001177867 UCSC: chr1:58042184-58082741(+) OLP: chr1:58042184-58082741(+)
NM_199007 UCSC: chr1:58052818-58083121(+) OLP: chr1:58052818-58083121(+)
DB links


Entrez 68549
MGI 1098767
Ensembl ENSMUSG00000026039
Vega OTTMUSG00000021832
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.142
SPR
1.409
Oo
1.526
1C
1.414
2C
1.369
4C
1.699
ESC
1.182
MEF
1.243
p1C
1.349
p4C
1.602
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019260
(v2.0)		Sgol2NM_001177867,NM_19900768549
0.3878624.637932.600624.920222.365949.051814.197416.503221.324939.0367
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.079
H3.3
Rep.1
-0.031
H3.3
Rep.2
-0.98
H3K4me3
Rep.1
-0.337
H3K4me3
Rep.2
1.053
H3K27me3
Rep.1
1.089
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019260
(v2.0)		Sgol268549
523/3470.0788368/347-0.031314/347-0.9804109/347-0.3366174/3471.0531120/3471.0889
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.047
H3.3
Rep.1
-0.097
H3.3
Rep.2
-1.488
H3K4me3
Rep.1
-0.951
H3K4me3
Rep.2
1.02
H3K27me3
Rep.1
1.163
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019260
(v2.0)		Sgol268549
233/1580.0473160/158-0.09744/158-1.487532/158-0.950978/1581.0203538/1581.1633
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019260
(v2.0)		Sgol268549
54.24127077.49
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019260
(v2.0)		Sgol268549
20.35362678.28
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A