DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2019855
GeneSmad3
SynonymsMadh3
Smad 3
DescriptionSMAD family member 3
LocusNM_016769 UCSC: chr9:63494574-63605801(-) OLP: chr9:63494574-63605801(-)
DB links


Entrez 17127
MGI 1201674
Ensembl ENSMUSG00000032402
Vega OTTMUSG00000021500
Featureprotein-coding
GO_BP
  •   73 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      skeletal system development (GO:0001501)
      osteoblast differentiation (GO:0001649)
      response to hypoxia (GO:0001666)
      in utero embryonic development (GO:0001701)
      mesoderm formation (GO:0001707)
      somitogenesis (GO:0001756)
      liver development (GO:0001889)
      negative regulation of protein phosphorylation (GO:0001933)
      heart looping (GO:0001947)
      osteoblast development (GO:0002076)
      immune system development (GO:0002520)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      transport (GO:0006810)
      activation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0006919)
      immune response (GO:0006955)
      cell cycle arrest (GO:0007050)
      transforming growth factor beta receptor signaling pathway (GO:0007179)
      SMAD protein complex assembly (GO:0007183)
      gastrulation (GO:0007369)
      endoderm development (GO:0007492)
      negative regulation of cell proliferation (GO:0008285)
      embryonic pattern specification (GO:0009880)
      positive regulation of alkaline phosphatase activity (GO:0010694)
      positive regulation of epithelial to mesenchymal transition (GO:0010718)
      regulation of striated muscle tissue development (GO:0016202)
      regulation of transforming growth factor beta receptor signaling pathway (GO:0017015)
      evasion or tolerance of host defenses by virus (GO:0019049)
      signal transduction involved in regulation of gene expression (GO:0023019)
      negative regulation of cell growth (GO:0030308)
      positive regulation of cell migration (GO:0030335)
      positive regulation of bone mineralization (GO:0030501)
      thyroid gland development (GO:0030878)
      positive regulation of chondrocyte differentiation (GO:0032332)
      positive regulation of interleukin-1 beta production (GO:0032731)
      regulation of transforming growth factor beta2 production (GO:0032909)
      positive regulation of transforming growth factor beta3 production (GO:0032916)
      activin receptor signaling pathway (GO:0032924)
      negative regulation of osteoblast proliferation (GO:0033689)
      positive regulation of catenin import into nucleus (GO:0035413)
      intracellular signal transduction (GO:0035556)
      nodal signaling pathway (GO:0038092)
      T cell activation (GO:0042110)
      negative regulation of protein catabolic process (GO:0042177)
      positive regulation of transcription factor import into nucleus (GO:0042993)
      negative regulation of apoptotic process (GO:0043066)
      cell-cell junction organization (GO:0045216)
      negative regulation of osteoblast differentiation (GO:0045668)
      positive regulation of transcription, DNA-templated (GO:0045893)
      negative regulation of mitotic cell cycle (GO:0045930)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      paraxial mesoderm morphogenesis (GO:0048340)
      developmental growth (GO:0048589)
      embryonic foregut morphogenesis (GO:0048617)
      embryonic cranial skeleton morphogenesis (GO:0048701)
      regulation of epithelial cell proliferation (GO:0050678)
      negative regulation of inflammatory response (GO:0050728)
      regulation of immune response (GO:0050776)
      protein stabilization (GO:0050821)
      positive regulation of positive chemotaxis (GO:0050927)
      regulation of binding (GO:0051098)
      positive regulation of stress fiber assembly (GO:0051496)
      positive regulation of focal adhesion assembly (GO:0051894)
      pericardium development (GO:0060039)
      transdifferentiation (GO:0060290)
      negative regulation of wound healing (GO:0061045)
      lens fiber cell differentiation (GO:0070306)
      positive regulation of canonical Wnt signaling pathway (GO:0090263)
      extrinsic apoptotic signaling pathway (GO:0097191)
      activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway (GO:0097296)
      positive regulation of gene expression involved in extracellular matrix organization (GO:1901313)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019855
(v2.0)		Smad3NM_01676917127
4.46919102.545101.71127.16176.657434.3889920.7626126.93110.56253.11705
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019855
(v2.0)		Smad317127
984/5490.3285554/549-0.1029168/5491.8697594/5491.4408235/5490.82891422/5490.7726
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019855
(v2.0)		Smad317127
592/2100.979318/2100.4805144/2102.9857471/2102.4825172/2101.7498968/2101.6007
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019855
(v2.0)		Smad317127
78.007821735.95
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019855
(v2.0)		Smad317127
12.43571468.52
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A