DBTMEE:2019873
| Gene | Smarcc2 |
| Synonyms | |
| Description | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 |
| Locus | NM_001114097 UCSC: chr10:127896292-127927230(+) OLP: chr10:127896292-127927230(+)
NM_198160 UCSC: chr10:127896292-127927230(+) OLP: chr10:127896292-127927230(+)
NM_001114096 UCSC: chr10:127896292-127927230(+) OLP: chr10:127896292-127927230(+)
|
| DB links |
Entrez 68094
MGI 1915344
Ensembl ENSMUSG00000025369
|
| Feature | protein-coding |
| GO_BP |
-
 11 Terms
negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
nucleosome disassembly (GO:0006337)
chromatin remodeling (GO:0006338)
transcription, DNA-templated (GO:0006351)
regulation of transcription, DNA-templated (GO:0006355)
nervous system development (GO:0007399)
chromatin modification (GO:0016568)
regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment (GO:0021882)
ATP-dependent chromatin remodeling (GO:0043044)
negative regulation of transcription, DNA-templated (GO:0045892)
positive regulation of transcription, DNA-templated (GO:0045893)
|
| GO_MF |
-
6 Terms
|
| GO_CC |
-
7 Terms
|
| KEGG | |
| Ver2_FPKM |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | ESC_FPKM | MEF_FPKM | p1C_FPKM | p4C_FPKM | iPSC_FPKM |
|---|
2019873
(v2.0) | Smarcc2 | NM_001114096,NM_001114097,NM_198160 | 68094
| 34.5532 | 6.76948 | 10.9269 | 5.39195 | 6.05735 | 7.8437 | 32.8068 | 16.9031 | 4.58853 | 6.68212 |
|
| SPR_Histone_Erkek_5KaroundTSS |
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2019873
(v2.0) | Smarcc2 | 68094
| 652/436 | 0.0676 | 387/436 | -0.2875 | 100/436 | 1.4515 | 241/436 | 0.4737 | 24/436 | -2.0803 | 167/436 | -1.9741 |
|
| SPR_Histone_Erkek_2KaroundTSS |
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2019873
(v2.0) | Smarcc2 | 68094
| 350/173 | 0.5013 | 178/173 | -0.0747 | 94/173 | 2.6385 | 225/173 | 1.696 | 11/173 | -1.8262 | 73/173 | -1.8228 |
|
| SPR_Methy_Kobayashi_5KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2019873
(v2.0) | Smarcc2 | 68094
| 64.829 | 154 | 42.1 |
|
| SPR_Methy_Kobayashi_2KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2019873
(v2.0) | Smarcc2 | 68094
| 18.0279 | 103 | 17.5 |
|
| SOLiD_OocyteTo4C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno1C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno4C_FPKM_gene_guided |
N/A |
| Illumina_Oo_2C_FPKM_gene_guided |
N/A |
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
N/A |
| NIA60mer |
N/A |
| MOE430 |
N/A |
| Agilent44K |
N/A |
| Proteome |
N/A |
