DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2020107
GeneSnrpa1
SynonymsU2 snRNP-A'
Descriptionsmall nuclear ribonucleoprotein polypeptide A'
LocusNM_021336 UCSC: chr7:73205222-73219473(+) OLP: chr7:73205222-73219473(+)
DB links


Entrez 68981
MGI 1916231
Ensembl ENSMUSG00000030512
Vega OTTMUSG00000024902
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.228
SPR
1.467
Oo
1.01
1C
1.979
2C
2.058
4C
1.988
ESC
1.381
MEF
0.79
p1C
1.904
p4C
2.074
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020107
(v2.0)		Snrpa1NM_02133668981
15.902328.30169.2322394.3281113.1696.189123.04285.1594679.1102117.538
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.046
H3.3
Rep.1
-0.081
H3.3
Rep.2
1.827
H3K4me3
Rep.1
0.629
H3K4me3
Rep.2
-0.946
H3K27me3
Rep.1
-0.713
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020107
(v2.0)		Snrpa168981
626/453-0.0461464/453-0.0814135/4531.827279/4530.629256/453-0.9459418/453-0.7133
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.114
H3.3
Rep.1
-0.116
H3.3
Rep.2
2.809
H3K4me3
Rep.1
1.651
H3K4me3
Rep.2
-2.12
H3K27me3
Rep.1
-1.176
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020107
(v2.0)		Snrpa168981
329/2130.1139213/213-0.1156129/2132.8088268/2131.651111/213-2.1199142/213-1.1758
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020107
(v2.0)		Snrpa168981
56.802814240
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020107
(v2.0)		Snrpa168981
23.757510622.41
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019530
(v1.0)		2876C0451F10-3Mm.821Snrpa168981
2.8892.82572.89882.89623.23182.95182.9233
0019530
(v1.0)		5648H3004F02-3Mm.821Snrpa168981
U008186NAP090323-1Snrpa1;TC919814,TC919813P57784U,F,23.93443.80343.70134.17723.91864.24934.036
MOE430 N/A
Agilent44K N/A
Proteome N/A