DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2020110
GeneSnrpc
SynonymsSnrp1c
U1-C
DescriptionU1 small nuclear ribonucleoprotein C
LocusNM_011432 UCSC: chr17:27977032-27988912(+) OLP: chr17:27977032-27988912(+)
DB links


Entrez 20630
MGI 109489
Ensembl ENSMUSG00000024217
Vega OTTMUSG00000023175
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.564
SPR
1.697
Oo
1.297
1C
2.428
2C
2.781
4C
1.742
ESC
1.846
MEF
1.37
p1C
2.881
p4C
1.848
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020110
(v2.0)
SnrpcNM_01143220630
35.607148.741818.8137267.08603.16254.228269.09122.4168758.47369.4879
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.078
H3.3
Rep.1
-0.283
H3.3
Rep.2
1.611
H3K4me3
Rep.1
0.796
H3K4me3
Rep.2
-0.021
H3K27me3
Rep.1
0.264
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020110
(v2.0)
Snrpc20630
592/3930.0781350/393-0.2826101/3931.6112272/3930.796493/393-0.0212715/3930.2635
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.145
H3.3
Rep.1
-0.135
H3.3
Rep.2
2.86
H3K4me3
Rep.1
2.057
H3K4me3
Rep.2
-1.075
H3K27me3
Rep.1
-0.9
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020110
(v2.0)
Snrpc20630
229/1450.1455143/145-0.135393/1452.8598243/1452.057316/145-1.0755117/145-0.9002
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020110
(v2.0)
Snrpc20630
79.411913857.54
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020110
(v2.0)
Snrpc20630
22.32427728.99
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A