DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2020315
GeneSpg20
SynonymsTAHCCP1
Descriptionspastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
LocusNM_001144988 UCSC: chr3:54916030-54941254(+) OLP: chr3:54916030-54941254(+)
NM_144895 UCSC: chr3:54916030-54941254(+) OLP: chr3:54916030-54941254(+)
NM_001144987 UCSC: chr3:54916088-54941254(+) OLP: chr3:54916088-54941254(+)
DB links


Entrez 229285
MGI 2139806
Ensembl ENSMUSG00000036580
Vega OTTMUSG00000026686
Featureprotein-coding
GO_BP
  •   7 Terms
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.199
SPR
1.563
Oo
1.834
1C
1.399
2C
0.933
4C
0.862
ESC
1.112
MEF
1.809
p1C
1.007
p4C
0.747
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020315
(v2.0)		Spg20NM_001144987,NM_001144988,NM_144895229285
14.819135.532567.307724.07267.564456.2700711.949163.37719.16864.57927
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.316
H3.3
Rep.1
0.349
H3.3
Rep.2
4.724
H3K4me3
Rep.1
4.056
H3K4me3
Rep.2
-0.019
H3K27me3
Rep.1
-0.362
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020315
(v2.0)		Spg20229285
787/4430.3156612/4430.3493990/4434.72372945/4434.0565105/443-0.019522/443-0.3617
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.682
H3.3
Rep.1
0.568
H3.3
Rep.2
5.577
H3K4me3
Rep.1
4.711
H3K4me3
Rep.2
0.111
H3K27me3
Rep.1
-0.165
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020315
(v2.0)		Spg20229285
406/1770.6818285/1770.5684743/1775.5771868/1774.711446/1770.1112239/177-0.1651
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020315
(v2.0)		Spg20229285
52.13212442.04
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020315
(v2.0)		Spg20229285
6.2948679.4
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A