DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2020803
GeneSynrg
SynonymsAp1gbp1
L71-5
Descriptionsynergin, gamma
LocusNM_194341 UCSC: chr11:83777933-83858078(+) OLP: chr11:83777933-83858078(+)
DB links


Entrez 217030
MGI 1354742
Ensembl ENSMUSG00000034940
Vega OTTMUSG00000000989
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.007
SPR
1.153
Oo
1.249
1C
0.896
2C
0.673
4C
0.511
ESC
0.816
MEF
1.272
p1C
0.719
p4C
0.433
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020803
(v2.0)		SynrgNM_194341217030
9.1690113.221616.75636.863793.709852.241675.5471617.72564.23251.70989
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.094
H3.3
Rep.1
-0.063
H3.3
Rep.2
-0.087
H3K4me3
Rep.1
-0.108
H3K4me3
Rep.2
-2.299
H3K27me3
Rep.1
-2.047
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020803
(v2.0)		Synrg217030
649/4260.0943442/426-0.062933/426-0.0867157/426-0.108120/426-2.2986155/426-2.0473
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.347
H3.3
Rep.1
0.192
H3.3
Rep.2
1.04
H3K4me3
Rep.1
1.007
H3K4me3
Rep.2
-2.292
H3K27me3
Rep.1
-1.802
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020803
(v2.0)		Synrg217030
289/1590.3473197/1590.191828/1591.0401128/1591.0077/159-2.292468/159-1.802
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020803
(v2.0)		Synrg217030
65.925211258.86
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020803
(v2.0)		Synrg217030
14.48055327.32
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A