DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2020881
GeneTaf4b
Synonyms105kDa
Taf2c2
TAFII105
DescriptionTAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
LocusNM_001100449 UCSC: chr18:14941754-15058868(+) OLP: chr18:14941754-15058868(+)
DB links


Entrez 72504
MGI 2152345
Ensembl ENSMUSG00000054321
Featureprotein-coding
GO_BP
  •   2 Terms
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
      transcription from RNA polymerase II promoter (GO:0006366)
GO_MF
GO_CC
KEGG
  •   2 Terms
Ver2_FPKM
Log10 (FPKM+1)
0.216
SPR
0.962
Oo
1.257
1C
2.039
2C
1.905
4C
0.632
ESC
0.501
MEF
1.118
p1C
1.81
p4C
0.652
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020881
(v2.0)		Taf4bNM_00110044972504
0.6452438.1641217.0823108.33379.29363.285182.1700512.113463.49973.49126
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.207
H3.3
Rep.1
0.188
H3.3
Rep.2
2.237
H3K4me3
Rep.1
1.049
H3K4me3
Rep.2
0.867
H3K27me3
Rep.1
0.544
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020881
(v2.0)		Taf4b72504
595/3610.2075446/3610.1884144/3612.2374298/3611.0494159/3610.8673798/3610.5438
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.536
H3.3
Rep.1
0.063
H3.3
Rep.2
3.391
H3K4me3
Rep.1
2.156
H3K4me3
Rep.2
0.028
H3K27me3
Rep.1
-0.304
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020881
(v2.0)		Taf4b72504
313/1510.5358171/1510.0628140/1513.3907271/1512.156537/1510.0281185/151-0.3041
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020881
(v2.0)		Taf4b72504
34.03419236.99
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020881
(v2.0)		Taf4b72504
10.38136715.49
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A